Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_K03
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    28   1.5  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   4.5  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = -1

Query: 687 PTFGNSRXSEPAAAISRG--------PNLSK*ARKLQRPSSTRPRYRNPVASISTRTPPI 532
           P F NS  S P+ A +          P+ +         SS+ PR  +P+AS +   PP+
Sbjct: 385 PAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASNAENKPPV 444

Query: 531 TRWAP 517
            + +P
Sbjct: 445 AQQSP 449


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 118 GGRAHNPPGVKWLVEPIDIYNVNK 47
           GG  H+P  V WL+ P DIY+  K
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYSGRK 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,397
Number of Sequences: 5004
Number of extensions: 49817
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)