Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_K01
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 33 0.21
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 1.5
06_03_1310 + 29238644-29240260 30 2.0
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 30 2.6
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 30 2.6
12_02_1174 - 26696869-26698191 29 4.6
08_02_1615 + 28257275-28258428,28258523-28259144 29 4.6
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 29 4.6
04_01_0041 - 464695-464850,467485-469029 29 6.1
09_01_0157 + 2317965-2318321 28 8.0
07_03_0001 + 12219741-12219927,12219976-12220955 28 8.0
06_03_0141 - 17192151-17192166,17192305-17192630 28 8.0
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 8.0
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.0
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 541 LPXRSRLHQPDHXIPDSIHQPPQT*HPFPSIP-XTPYXKEFA-PGLKPPXSSXAPSXYLT 714
LP R+R+ +PD + D + + P+ S P PY F+ P PP +PS L
Sbjct: 332 LPARARVLRPDELLLDHYYYHSSSSDPYYSTPILPPYGDAFSPPNPPPPPPPMSPSCLLP 391
Query: 715 P 717
P
Sbjct: 392 P 392
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 555 SATSTRSSXPRFHTPTTP 608
S+T+TR S PR H PTTP
Sbjct: 4 SSTATRLSPPRLHAPTTP 21
>06_03_1310 + 29238644-29240260
Length = 538
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +1
Query: 574 HXIPDSIHQPPQT*HPFPSIPXTPYXKEFAPGLKPPXSSXAPSXYLTPS-SLGMXKGXXP 750
H P H PP+ P P P +P P PP S +P + PS S G P
Sbjct: 381 HRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASP 438
Query: 751 P 753
P
Sbjct: 439 P 439
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Frame = +1
Query: 619 PFPSIPXTPYXKEFAPGLKPPXSSXAPSXYLT--PSSLGMXKGXXPP 753
P P P P APG P S P+ Y T P G G PP
Sbjct: 158 PLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQPAGPTSGAPPP 204
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.9 bits (64), Expect = 2.6
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 286 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADIT 459
TE +N V V L SS GY D + ++ V + K+ V +D TADI+
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 460 VEGVNVLATPSSSRITIGGLALMHQ 534
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +1
Query: 544 PXRSRLH-QPDHXIPDSIHQPPQT*HPFPSIPXTPYXKEFAPGLKPPXSSXAPSXYLTPS 720
P R+R +P H P QPP + P P P P P +KPP P P
Sbjct: 128 PPRTRTRVEPPHRPPPVKPQPPPSLPP-PPPPPPPPPPPRPPSVKPPVVQPKPQ---PPP 183
Query: 721 SLGMXKGXXPP 753
SL PP
Sbjct: 184 SLQPPSPPPPP 194
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/62 (30%), Positives = 23/62 (37%)
Frame = +1
Query: 565 QPDHXIPDSIHQPPQT*HPFPSIPXTPYXKEFAPGLKPPXSSXAPSXYLTPSSLGMXKGX 744
QP H H PQ+ HP P P AP PP S P ++ + L K
Sbjct: 32 QPPHSHLLHHHHSPQS-HPQPDAPAAAAPPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPL 90
Query: 745 XP 750
P
Sbjct: 91 PP 92
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 452 TSQLKESMCWPPLHPLALLSAVSPLCIKPPSP 547
T+ +K S C+PP P + V P+ + PP P
Sbjct: 661 TAIVKGSTCYPPPPPPSSTPPVEPVAVFPPPP 692
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 247 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 423
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 424 TVD 432
+D
Sbjct: 100 PLD 102
>09_01_0157 + 2317965-2318321
Length = 118
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 458 QLKESMCWPPLHP--LALLSAVSPLCIKPP 541
++K S CW P+ P L S +CI+PP
Sbjct: 19 KIKSSKCWNPIRPPTTLLTSNGCRICIRPP 48
>07_03_0001 + 12219741-12219927,12219976-12220955
Length = 388
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 458 QLKESMCWPPLHP--LALLSAVSPLCIKPP 541
++K S CW P+ P L S +CI+PP
Sbjct: 275 KIKSSKCWNPIRPPTTLLTSNGCRICIRPP 304
>06_03_0141 - 17192151-17192166,17192305-17192630
Length = 113
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 458 QLKESMCWPPLHP--LALLSAVSPLCIKPP 541
++K S CW P+ P L S +CI+PP
Sbjct: 19 KIKSSKCWNPIRPPTTLLTSNGCRICIRPP 48
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = +1
Query: 475 VLATPSSSRITIGGLALMHQATLPXRS---RLHQPDHXIPDSIHQPPQT*HPFPSIPXTP 645
+L P S +++ H+++ P ++ +LH PD P + P T P P P
Sbjct: 20 LLLAPYCSAVSVPNNNTHHRSSSPTQTTLQQLHSPDSPPPPPLPTPTVTTPTPPPPPPAP 79
Query: 646 YXKEFAPGLKPPXSSXAPSXYLTPSSL 726
+ PP P+ P+S+
Sbjct: 80 RPPRRHHRIPPPPPPLLPTPPPPPASI 106
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 238 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 417
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 418 PVTVDLCWTTADITVEGVNVLATPSS 495
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,865,609
Number of Sequences: 37544
Number of extensions: 407990
Number of successful extensions: 1156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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