Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_J16
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 223 2e-59
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 121 1e-28
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 119 5e-28
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 105 6e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 2e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 2e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 61 2e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 5e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 223 bits (545), Expect = 2e-59
Identities = 102/113 (90%), Positives = 105/113 (92%)
Frame = +3
Query: 261 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 440
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 441 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 599
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTG
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTG 150
Score = 70.1 bits (164), Expect = 4e-13
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +1
Query: 151 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 258
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPS G+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR 37
Score = 68.5 bits (160), Expect = 1e-12
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +1
Query: 601 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 696
IVLDSGDGV+HTVPIYEGYALPHAI+RLDLAG
Sbjct: 151 IVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 182
Score = 65.3 bits (152), Expect = 1e-11
Identities = 34/51 (66%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Frame = +2
Query: 695 GRDLTDYLMKILTERGYSFTTTXXAGKXFVTS-RXXLCYVALDFEQEMATA 844
GRDLTDYLMKIL ERGY+F+TT A + V + LCYVALDFEQE+ TA
Sbjct: 182 GRDLTDYLMKILMERGYTFSTT--AEREIVRDIKEKLCYVALDFEQELQTA 230
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 121 bits (291), Expect = 1e-28
Identities = 56/109 (51%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Frame = +3
Query: 276 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 452
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 453 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 599
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTG
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTG 155
Score = 44.8 bits (101), Expect = 2e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +1
Query: 169 LVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 258
+ +DNGSG KAGFAGDD P+ +FP+ G+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41
Score = 43.6 bits (98), Expect = 4e-05
Identities = 16/32 (50%), Positives = 27/32 (84%)
Frame = +1
Query: 601 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 696
IVL+ GDG++H+VPIY+G+++P AI + ++ G
Sbjct: 156 IVLECGDGLTHSVPIYDGFSIPSAIQQEEIGG 187
Score = 33.1 bits (72), Expect = 0.051
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 695 GRDLTDYLMKILTERGYSFTTTXXAGKXFVTS-RXXLCYVALDFEQEM 835
GRD+TDYL L + G+ ++ A K V + CYVA DF E+
Sbjct: 187 GRDVTDYLQLQLRKSGHELVSS--AEKEIVREIKEKCCYVASDFRSEI 232
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 119 bits (287), Expect = 5e-28
Identities = 51/101 (50%), Positives = 76/101 (75%)
Frame = +3
Query: 297 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 476
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 477 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 599
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSG 150
Score = 47.2 bits (107), Expect = 3e-06
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +1
Query: 601 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 696
+V+DSGDGV+H VP+YE L H + RLD+AG
Sbjct: 151 VVVDSGDGVTHIVPVYESVVLNHLVGRLDVAG 182
Score = 39.1 bits (87), Expect = 8e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 157 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 258
E A +V+DNG+G K G+A D+ PR FPS G+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
Score = 34.7 bits (76), Expect = 0.017
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 695 GRDLTDYLMKILTERGYSFTTTXXAGKXFVTSRXXLCYVALDFE 826
GRD T YL+ +L +GY+F T + + LCYV+ D E
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTADF-ETVREMKEKLCYVSYDLE 224
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 105 bits (253), Expect = 6e-24
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Frame = +3
Query: 300 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 476
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 477 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 584
LNP NRE +IMFE+FN +Y+A+QAVL+L AS
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 604 VLDSGDGVSHTVPIYEGYALPHAILRLDLAG 696
V+DSGDGV+H +P+ EGY + +I + LAG
Sbjct: 183 VVDSGDGVTHIIPVAEGYVIGSSIKTMPLAG 213
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 169 LVVDNGSGMCKAGFAGDDAPRAVFPS 246
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.3 bits (167), Expect = 2e-13
Identities = 33/85 (38%), Positives = 48/85 (56%)
Frame = +3
Query: 342 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 521
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 522 ETFNTPAMYVAIQAVLSLYASGRTT 596
E+ PA Y+A Q + +ASG+ T
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGT 147
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 154 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 258
+EV+A+V+D GS + GF+G+D P+ V PS G+
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.5 bits (150), Expect = 2e-11
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Frame = +3
Query: 288 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 464
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 465 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 578
TE NP R MT+++FE +N P++ I + S Y
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
Score = 30.7 bits (66), Expect = 0.27
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 169 LVVDNGSGMCKAGFAGDDAPRAVF 240
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 601 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGSR 702
IVL+ G+ SH +P+ G + R+ GS+
Sbjct: 168 IVLNLGNAASHVIPVLNGERILSEAKRISWGGSQ 201
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 61.3 bits (142), Expect = 2e-10
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Frame = +3
Query: 261 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 434
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 435 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 596
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKST 150
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 154 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSXRG 255
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.2 bits (97), Expect = 5e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 357 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 524
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 525 TFNTPAMYVAIQAVLSLYASG 587
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 417 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 560
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 601 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 696
+V+DSG +H +P+ + A+ R+D+ G
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGG 190
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 459 LLTEAPLNPKANREKMTQIMFETFN 533
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 196 TYRSHCLLPTRQLLRRTS*ISEI 128
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,214
Number of Sequences: 5004
Number of extensions: 73726
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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