Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_J13
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.64 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 484 HFRLQVHRNRTPLTRTYTVRARRSSPVKAGGL 389
           H R  +H NRT L  +  V   +S   K GGL
Sbjct: 159 HIRRTLHMNRTSLKTSKIVSYPKSRSRKKGGL 190


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 419  PGPDGIRSGQWRAVPVHLKAEMFNAW 496
            PGP+GI+   +     HL    FN W
Sbjct: 1139 PGPNGIKMPSFMEGMPHLPFTPFNFW 1164


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 442 GSVACGSCALE----GGNVQCMDGTRRNTRNSTAV 534
           GS A GS + E    G N Q    +R NT N+T++
Sbjct: 597 GSGASGSGSAENLSSGSNNQTSSASRENTSNTTSM 631


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 518 EILRQCRTVFVPKVERPXGPGEY 586
           EIL++  T+FV  ++RP    +Y
Sbjct: 347 EILKRANTLFVLTLQRPQDVDKY 369


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 514 YFASCHPCIEHFRLQVHR 461
           Y A CHP I H   ++ R
Sbjct: 153 YIAICHPFISHTMSKLSR 170


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 254 ANRSPSPRASVRHPHTRH 201
           ++RSPSP      PH  H
Sbjct: 40  SSRSPSPSLLTSQPHQDH 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,179
Number of Sequences: 438
Number of extensions: 5625
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)