Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_J09
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1747 + 29188568-29188715,29188793-29189541                       31   0.89 
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    30   2.7  
10_08_0187 + 15592130-15592512,15592597-15592972                       29   6.3  
08_02_0813 + 21459776-21461128                                         28   8.3  
03_02_0488 - 8824980-8825267,8825364-8827775                           28   8.3  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.3  
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     28   8.3  

>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +1

Query: 400 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLGM 555
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G+
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPGL 261


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 431 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFTLRSNSVVCRSNS 282
           T + S    GGCS    +   PP AFRG+  +   P     + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>10_08_0187 + 15592130-15592512,15592597-15592972
          Length = 252

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +1

Query: 298 TTELERRVNGAAALGWCPRNACGGLTWYC 384
           +T  ER V GAAA G C RN   G  W C
Sbjct: 125 STTSERDVTGAAAAGRCSRN--DGKRWRC 151


>08_02_0813 + 21459776-21461128
          Length = 450

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 315 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 494
           +G++ C  WL +  R   P   LL+   TT      R  V+      W K+  IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288

Query: 495 QL 500
           +L
Sbjct: 289 EL 290


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
 Frame = -2

Query: 417 RSP-RRWLQPRLAVPRQASTSVPRTPA---KCCSPIH---PAFQLSRLSIQFI*RSASIR 259
           RSP RR L P L  PRQ+STS P  P+   KC  P H    +  L   ++Q + R +   
Sbjct: 461 RSPLRRMLDPILK-PRQSSTSGPIQPSFVPKCHLPGHIDKQSLSLGGSALQNVQRRSVDS 519

Query: 258 TVDSDSR 238
            V+S+ R
Sbjct: 520 VVNSNCR 526


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 429 GRGERSPRRWLQPRLAVPRQASTSVPRTP 343
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 312 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 491
           T G   CS++L    R+W     +++   +      LRA   +N S +    +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187

Query: 492 MQLDN 506
             LDN
Sbjct: 188 --LDN 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,862,201
Number of Sequences: 37544
Number of extensions: 436609
Number of successful extensions: 1149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)