Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_J05
(838 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08415-1|CAA69692.1| 502|Homo sapiens nicotinic acetylcholine r... 33 0.97
X53179-1|CAA37320.1| 502|Homo sapiens precursor peptide (AA -25... 33 0.97
U62437-1|AAB40115.1| 502|Homo sapiens nicotinic acetylcholine r... 33 0.97
U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subu... 33 0.97
BC075041-1|AAH75041.1| 502|Homo sapiens cholinergic receptor, n... 33 0.97
BC075040-1|AAH75040.1| 502|Homo sapiens cholinergic receptor, n... 33 0.97
BC052642-1|AAH52642.1| 136|Homo sapiens GTF3C1 protein protein. 33 0.97
BC044857-1|AAH44857.1| 978|Homo sapiens GTF3C1 protein protein. 33 0.97
AL592078-3|CAI16184.1| 502|Homo sapiens cholinergic receptor, n... 33 0.97
AJ001935-1|CAA05108.1| 504|Homo sapiens CHRNB2 protein. 33 0.97
AF077186-1|AAD45422.1| 502|Homo sapiens neuronal nicotinic acet... 33 0.97
AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor (T... 33 0.97
BC030221-1|AAH30221.1| 1075|Homo sapiens ABI gene family, member... 31 3.9
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 31 6.8
Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine r... 30 9.0
X68275-1|CAA48336.1| 451|Homo sapiens nicotinic receptor beta 4... 30 9.0
U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine r... 30 9.0
U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic acetylch... 30 9.0
BX640950-1|CAE45974.1| 1042|Homo sapiens hypothetical protein pr... 30 9.0
BX640786-1|CAE45876.1| 1042|Homo sapiens hypothetical protein pr... 30 9.0
BC116458-1|AAI16459.1| 1042|Homo sapiens integrator complex subu... 30 9.0
BC105094-1|AAI05095.1| 1042|Homo sapiens integrator complex subu... 30 9.0
BC105092-1|AAI05093.1| 1042|Homo sapiens integrator complex subu... 30 9.0
BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor, n... 30 9.0
BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor, n... 30 9.0
AL513523-3|CAH71416.1| 1042|Homo sapiens integrator complex subu... 30 9.0
AK074979-1|BAC11329.1| 794|Homo sapiens protein ( Homo sapiens ... 30 9.0
AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic acet... 30 9.0
>Y08415-1|CAA69692.1| 502|Homo sapiens nicotinic acetylcholine
receptor beta2 subunit precursor protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.97
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ ++P D Q CT K S + E+D V+ + S+ + SG WD+ L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>X53179-1|CAA37320.1| 502|Homo sapiens precursor peptide (AA -25 to
477) protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.97
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ ++P D Q CT K S + E+D V+ + S+ + SG WD+ L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>U62437-1|AAB40115.1| 502|Homo sapiens nicotinic acetylcholine
receptor beta2 subunit precursor protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.97
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ ++P D Q CT K S + E+D V+ + S+ + SG WD+ L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>U02619-1|AAA17985.1| 2109|Homo sapiens TFIIIC Box B-binding subunit
protein.
Length = 2109
Score = 33.5 bits (73), Expect = 0.97
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 325 LQHLAGVLG--TLVEA*RGTAKRGCNHRRGLRSPRPMYLITAPSPXIKRLDISTPISMQL 498
L+H GVL ++E +G GC +R LR PRP+ L + +P ++ +++ + +
Sbjct: 2022 LRHYQGVLQPVAVLELLQGLESLGCIRKRWLRKPRPVSLFS--TPVVEEVEVPSSLDESP 2079
Query: 499 DNWPNDMQTCTFKXG 543
+ CT + G
Sbjct: 2080 MAFYEPTLDCTLRLG 2094
>BC075041-1|AAH75041.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.97
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ ++P D Q CT K S + E+D V+ + S+ + SG WD+ L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>BC075040-1|AAH75040.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.97
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ ++P D Q CT K S + E+D V+ + S+ + SG WD+ L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>BC052642-1|AAH52642.1| 136|Homo sapiens GTF3C1 protein protein.
Length = 136
Score = 33.5 bits (73), Expect = 0.97
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 325 LQHLAGVLG--TLVEA*RGTAKRGCNHRRGLRSPRPMYLITAPSPXIKRLDISTPISMQL 498
L+H GVL ++E +G GC +R LR PRP+ L + +P ++ +++ + +
Sbjct: 49 LRHYQGVLQPVAVLELLQGLESLGCIRKRWLRKPRPVSLFS--TPVVEEVEVPSSLDESP 106
Query: 499 DNWPNDMQTCTFKXG 543
+ CT + G
Sbjct: 107 MAFYEPTLDCTLRLG 121
>BC044857-1|AAH44857.1| 978|Homo sapiens GTF3C1 protein protein.
Length = 978
Score = 33.5 bits (73), Expect = 0.97
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 325 LQHLAGVLG--TLVEA*RGTAKRGCNHRRGLRSPRPMYLITAPSPXIKRLDISTPISMQL 498
L+H GVL ++E +G GC +R LR PRP+ L + +P ++ +++ + +
Sbjct: 891 LRHYQGVLQPVAVLELLQGLESLGCIRKRWLRKPRPVSLFS--TPVVEEVEVPSSLDESP 948
Query: 499 DNWPNDMQTCTFKXG 543
+ CT + G
Sbjct: 949 MAFYEPTLDCTLRLG 963
>AL592078-3|CAI16184.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.97
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ ++P D Q CT K S + E+D V+ + S+ + SG WD+ L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>AJ001935-1|CAA05108.1| 504|Homo sapiens CHRNB2 protein.
Length = 504
Score = 33.5 bits (73), Expect = 0.97
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ ++P D Q CT K S + E+D V+ + S+ + SG WD+ L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>AF077186-1|AAD45422.1| 502|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 2 protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.97
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ ++P D Q CT K S + E+D V+ + S+ + SG WD+ L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>AC002303-1|AAB67637.1| 1857|Homo sapiens Transcription factor
(TFIIIC) alpha chain, partial protein.
Length = 1857
Score = 33.5 bits (73), Expect = 0.97
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 325 LQHLAGVLG--TLVEA*RGTAKRGCNHRRGLRSPRPMYLITAPSPXIKRLDISTPISMQL 498
L+H GVL ++E +G GC +R LR PRP+ L + +P ++ +++ + +
Sbjct: 1770 LRHYQGVLQPVAVLELLQGLESLGCIRKRWLRKPRPVSLFS--TPVVEEVEVPSSLDESP 1827
Query: 499 DNWPNDMQTCTFKXG 543
+ CT + G
Sbjct: 1828 MAFYEPTLDCTLRLG 1842
>BC030221-1|AAH30221.1| 1075|Homo sapiens ABI gene family, member 3
(NESH) binding protein protein.
Length = 1075
Score = 31.5 bits (68), Expect = 3.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 395 LQPRLAVPRQASTSVPRTPAKCCSPTPPAFQPSR 294
+QP P+Q +TS+P TP + P PP +P R
Sbjct: 453 MQPTTPAPQQ-TTSIPSTPKRRPRPKPPRTKPER 485
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 30.7 bits (66), Expect = 6.8
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Frame = +1
Query: 175 PPPNSKIVVNLTLHLRHA---NIRESESTVRIQADLQMNWIDKRLGWNAG---GVGLQHL 336
P +S ++++ L L A ++ E E + L+ W D RL WN+ GV + +
Sbjct: 46 PATSSSQLISIKLQLSLAQLISVNEREQIMTTNVWLKQEWTDYRLTWNSSRYEGVNILRI 105
Query: 337 AG----VLGTLVEA*RGTAKRGCNHRRGLRSPRPMYLITAPSPXIKRLDISTPISMQLDN 504
+ ++ GT + +RS + + P I + + +++
Sbjct: 106 PAKRIWLPDIVLYNNDGTYEVSVYTNLIVRSNGSVLWLP---PAIYK----SACKIEVKY 158
Query: 505 WPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+P D Q CT K S + E+D V+ SM + SG WD+ L
Sbjct: 159 FPFDQQNCTLKFRSWTYDHTEIDMVLMTPTASMDDFTPSGEWDIVAL 205
>Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ +P D Q CT K S + E+D V+ SM + SG WD+ L
Sbjct: 155 IEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTASMDDFTPSGEWDIVAL 206
>X68275-1|CAA48336.1| 451|Homo sapiens nicotinic receptor beta 4
subunit protein.
Length = 451
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ +P D Q CT K S + E+D V+ SM + SG WD+ L
Sbjct: 108 IEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTASMDDFTPSGEWDIVAL 159
>U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ +P D Q CT K S + E+D V+ SM + SG WD+ L
Sbjct: 155 IEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTASMDDFTPSGEWDIVAL 206
>U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic
acetylcholine receptor subunit protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ +P D Q CT K S + E+D V+ SM + SG WD+ L
Sbjct: 155 IEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTASMDDFTPSGEWDIVAL 206
>BX640950-1|CAE45974.1| 1042|Homo sapiens hypothetical protein
protein.
Length = 1042
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 400 RRGLRSPRPMYLITAPSPXIKRLDISTPISMQLDNWPNDMQTCTFKXGSRMXNSDEMD 573
R LR P + ++PSP ++ + I P+SM++DN +D + + DE D
Sbjct: 486 RAMLREKFPEFC-SSPSPPVE-VKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEED 541
>BX640786-1|CAE45876.1| 1042|Homo sapiens hypothetical protein
protein.
Length = 1042
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 400 RRGLRSPRPMYLITAPSPXIKRLDISTPISMQLDNWPNDMQTCTFKXGSRMXNSDEMD 573
R LR P + ++PSP ++ + I P+SM++DN +D + + DE D
Sbjct: 486 RAMLREKFPEFC-SSPSPPVE-VKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEED 541
>BC116458-1|AAI16459.1| 1042|Homo sapiens integrator complex subunit
3 protein.
Length = 1042
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 400 RRGLRSPRPMYLITAPSPXIKRLDISTPISMQLDNWPNDMQTCTFKXGSRMXNSDEMD 573
R LR P + ++PSP ++ + I P+SM++DN +D + + DE D
Sbjct: 486 RAMLREKFPEFC-SSPSPPVE-VKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEED 541
>BC105094-1|AAI05095.1| 1042|Homo sapiens integrator complex subunit
3 protein.
Length = 1042
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 400 RRGLRSPRPMYLITAPSPXIKRLDISTPISMQLDNWPNDMQTCTFKXGSRMXNSDEMD 573
R LR P + ++PSP ++ + I P+SM++DN +D + + DE D
Sbjct: 486 RAMLREKFPEFC-SSPSPPVE-VKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEED 541
>BC105092-1|AAI05093.1| 1042|Homo sapiens integrator complex subunit
3 protein.
Length = 1042
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 400 RRGLRSPRPMYLITAPSPXIKRLDISTPISMQLDNWPNDMQTCTFKXGSRMXNSDEMD 573
R LR P + ++PSP ++ + I P+SM++DN +D + + DE D
Sbjct: 486 RAMLREKFPEFC-SSPSPPVE-VKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEED 541
>BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ +P D Q CT K S + E+D V+ SM + SG WD+ L
Sbjct: 155 IEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTASMDDFTPSGEWDIVAL 206
>BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ +P D Q CT K S + E+D V+ SM + SG WD+ L
Sbjct: 155 IEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTASMDDFTPSGEWDIVAL 206
>AL513523-3|CAH71416.1| 1042|Homo sapiens integrator complex subunit
3 protein.
Length = 1042
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 400 RRGLRSPRPMYLITAPSPXIKRLDISTPISMQLDNWPNDMQTCTFKXGSRMXNSDEMD 573
R LR P + ++PSP ++ + I P+SM++DN +D + + DE D
Sbjct: 486 RAMLREKFPEFC-SSPSPPVE-VKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEED 541
>AK074979-1|BAC11329.1| 794|Homo sapiens protein ( Homo sapiens
cDNA FLJ90498 fis, clone NT2RP3003963. ).
Length = 794
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 400 RRGLRSPRPMYLITAPSPXIKRLDISTPISMQLDNWPNDMQTCTFKXGSRMXNSDEMD 573
R LR P + ++PSP ++ + I P+SM++DN +D + + DE D
Sbjct: 238 RAMLREKFPEFC-SSPSPPVE-VKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEED 293
>AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 4 subunit protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 490 MQLDNWPNDMQTCTFKXGSRMXNSDEMDFVIDXRIYSMFE---SGAWDVTXL 636
+++ +P D Q CT K S + E+D V+ SM + SG WD+ L
Sbjct: 155 IEVKYFPFDQQNCTLKFRSWTYDHTEIDMVLMTPTASMDDFTPSGEWDIVAL 206
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,285,714
Number of Sequences: 237096
Number of extensions: 2393528
Number of successful extensions: 10859
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10854
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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