Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_J02
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0506 - 18188785-18190599 30 2.0
07_03_0214 - 15250941-15251181,15251237-15251550 29 3.5
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.5
12_02_0299 - 17051570-17052474,17053542-17053755 29 4.7
11_06_0202 - 21184217-21184503,21184622-21184982 29 4.7
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 29 6.2
10_03_0023 - 7151465-7152111,7152222-7152405 29 6.2
04_01_0041 - 464695-464850,467485-469029 29 6.2
01_05_0227 - 19512866-19514983 29 6.2
12_02_1174 - 26696869-26698191 28 8.1
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 8.1
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.1
01_04_0137 + 16522157-16522601,16522658-16522712,16523655-165238... 28 8.1
>09_04_0506 - 18188785-18190599
Length = 604
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 568 PIIKSPNSIHQPPQT*HPFPSIPXTPYXKEFAPG 669
P+ PN +H PPQ P + P P + PG
Sbjct: 120 PVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQPG 153
>07_03_0214 - 15250941-15251181,15251237-15251550
Length = 184
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = -2
Query: 677 GFNPGANSXWYGVQGIDGNGC*VWGGWCMEFGDLMIGLM*PRSXGEGGLMHKGETANSNA 498
G GA YGV + +G VWGG G M L + EG M + E + A
Sbjct: 54 GIGSGATVTGYGVPDMGPSGGVVWGGGAAR-GAAMTRLGRLGAPMEGSSMERREVSMGTA 112
Query: 497 RG 492
RG
Sbjct: 113 RG 114
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 285 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 458
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 459 VEGVNVLATPSSSRITIGGLALMHQ 533
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +1
Query: 535 PPSPXDLGYINPIIKSPNSIHQPPQT*-HPFPSIPXTPY---XKEFAPGLKPPLSSXAPI 702
PP ++ PI P+ PP PFP +P P+ F P PP P
Sbjct: 271 PPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPP 330
Query: 703 XVSHP 717
S P
Sbjct: 331 PPSFP 335
>11_06_0202 - 21184217-21184503,21184622-21184982
Length = 215
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +1
Query: 532 KPPSPXDLGYINPIIKSPNSIHQPPQT*HPFPSIPXTPYXKEFAPGLKPPLSSXAPIXVS 711
+P SP + +SP + P Q+ PS+P P P PP +S +P+
Sbjct: 130 EPSSPQQPPSAGKLAESPAAT--PAQSPTAAPSLPQAP-----KPSSPPPFTSPSPLPPP 182
Query: 712 HPLVTGHG 735
P T HG
Sbjct: 183 PPPPTSHG 190
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 574 IKSPNSIHQPPQT*HPFPSIPXTPYXKEFAPGLKPP 681
+ SP PP + P P +P PY + +P PP
Sbjct: 13 LNSPLWSAPPPSSSSPSPPVPPDPYGADLSPPPPPP 48
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 538 PSPXDLGYINPIIKSPNSIHQPPQT*HPFPSI-PXTPYXKEFAPGLKPPLSSXAPIXVSH 714
P P I P++ P + PP P PS+ P P PG+ P +S + VS
Sbjct: 218 PQPPPSSLIPPVLPLP--LLNPPPPPPPPPSLLPPVPLLPPLIPGVPPASASRSGRPVST 275
Query: 715 P 717
P
Sbjct: 276 P 276
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 422
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 423 TVD 431
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 463 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 371
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +1
Query: 535 PPSPXDLGYINPIIKSPNSIHQPPQT*HPFPSIPXTPYXKEFAPGLKPPLSSXAP 699
PP P + P + P QPP + P P P P P +KPP+ P
Sbjct: 126 PPPPRTRTRVEPPHRPPPVKPQPPPSLPP-PPPPPPPPPPPRPPSVKPPVVQPKP 179
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 8.1
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 538 PSPXDLGYINPIIKSPNSIHQPPQT*H-PFPSIPXTPYXKEFAPGLKPPLSSXAPIXVSH 714
P P +LG N + P+S+ P H PFP P + FAP P ++S A H
Sbjct: 535 PQPDNLGAFN--MGPPHSV--PNLHNHGPFPEASMRPPSRMFAPPNFPSIAS-ADAYRQH 589
Query: 715 PLVTGHG*GVRPLF 756
VT G V P F
Sbjct: 590 HEVTAVGENVPPPF 603
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 237 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 417 PVTVDLCWTTADVTVEGVNVLATPSS 494
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>01_04_0137 +
16522157-16522601,16522658-16522712,16523655-16523807,
16525750-16525944,16526096-16526618,16526712-16527103,
16527201-16527270,16527471-16527506,16527818-16527892
Length = 647
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 139 ISMERADGLSV*GGLEEEKALT-KEGMAEAARND*RHNFF 23
+++ R DG GG E + T +EGM R D R +FF
Sbjct: 113 LALRRRDGAGGDGGAAERRCATVREGMRRRRRGDCRVSFF 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,530,306
Number of Sequences: 37544
Number of extensions: 486503
Number of successful extensions: 1403
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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