Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_J01
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    36   0.005
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    35   0.015

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +1

Query: 232 MLAATTHLGGXKXLXXXXETYVYXRRXDGTHXIXLG 339
           +LAA +H+G  K L    E YV+ RR DG H I LG
Sbjct: 21  LLAADSHIGS-KNLEVRMENYVWKRRSDGIHIINLG 55


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 229 KMLAATTHLGGXKXLXXXXETYVYXRRXDGTHXIXLG 339
           ++LAA  H+G  K L    + YV+ RR DG H + LG
Sbjct: 19  QLLAANCHIGS-KNLEVRMDNYVWKRRSDGVHILNLG 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.137    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,065,579
Number of Sequences: 5004
Number of extensions: 11302
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)