Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_I17
         (838 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    33   0.97 
Z73359-1|CAA97728.1|  334|Homo sapiens 92M18.1 (breast cancer 2,...    33   1.7  
X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein.                  33   1.7  
U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein.                  33   1.7  
AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early ...    33   1.7  
AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early ...    33   1.7  
AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early ...    33   1.7  

>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 33.5 bits (73), Expect = 0.97
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = -1

Query: 787 SKSNVAMNAWLPQASIPVVTF 725
           SKS+VAMNAW PQAS P   F
Sbjct: 10  SKSDVAMNAWPPQASYPCGNF 30


>Z73359-1|CAA97728.1|  334|Homo sapiens 92M18.1 (breast cancer 2,
           early onset (breast cancer type 2 susceptibility prot
           protein.
          Length = 334

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 814 NDRKSRHRRSKSNVAMNAWLPQASIPVVTFLAPLA-KTLYXKGSIGRAFAVPMRTEHLDQ 638
           +D+K+  +R   +      LP    P+ TF++P A K      S G  +  P++ + L+ 
Sbjct: 176 DDQKNCKKRRALDFLSRLPLPPPVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNS 235

Query: 637 ASFCPFAP-REVSVL 596
               PF    E+S+L
Sbjct: 236 PQMTPFKKFNEISLL 250


>X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein.
          Length = 3418

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 814  NDRKSRHRRSKSNVAMNAWLPQASIPVVTFLAPLA-KTLYXKGSIGRAFAVPMRTEHLDQ 638
            +D+K+  +R   +      LP    P+ TF++P A K      S G  +  P++ + L+ 
Sbjct: 3260 DDQKNCKKRRALDFLSRLPLPPPVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNS 3319

Query: 637  ASFCPFAP-REVSVL 596
                PF    E+S+L
Sbjct: 3320 PQMTPFKKFNEISLL 3334


>U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein.
          Length = 3418

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 814  NDRKSRHRRSKSNVAMNAWLPQASIPVVTFLAPLA-KTLYXKGSIGRAFAVPMRTEHLDQ 638
            +D+K+  +R   +      LP    P+ TF++P A K      S G  +  P++ + L+ 
Sbjct: 3260 DDQKNCKKRRALDFLSRLPLPPPVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNS 3319

Query: 637  ASFCPFAP-REVSVL 596
                PF    E+S+L
Sbjct: 3320 PQMTPFKKFNEISLL 3334


>AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early onset
            protein.
          Length = 3418

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 814  NDRKSRHRRSKSNVAMNAWLPQASIPVVTFLAPLA-KTLYXKGSIGRAFAVPMRTEHLDQ 638
            +D+K+  +R   +      LP    P+ TF++P A K      S G  +  P++ + L+ 
Sbjct: 3260 DDQKNCKKRRALDFLSRLPLPPPVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNS 3319

Query: 637  ASFCPFAP-REVSVL 596
                PF    E+S+L
Sbjct: 3320 PQMTPFKKFNEISLL 3334


>AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early onset
            protein.
          Length = 3418

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 814  NDRKSRHRRSKSNVAMNAWLPQASIPVVTFLAPLA-KTLYXKGSIGRAFAVPMRTEHLDQ 638
            +D+K+  +R   +      LP    P+ TF++P A K      S G  +  P++ + L+ 
Sbjct: 3260 DDQKNCKKRRALDFLSRLPLPPPVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNS 3319

Query: 637  ASFCPFAP-REVSVL 596
                PF    E+S+L
Sbjct: 3320 PQMTPFKKFNEISLL 3334


>AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early onset
            protein.
          Length = 3418

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 814  NDRKSRHRRSKSNVAMNAWLPQASIPVVTFLAPLA-KTLYXKGSIGRAFAVPMRTEHLDQ 638
            +D+K+  +R   +      LP    P+ TF++P A K      S G  +  P++ + L+ 
Sbjct: 3260 DDQKNCKKRRALDFLSRLPLPPPVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNS 3319

Query: 637  ASFCPFAP-REVSVL 596
                PF    E+S+L
Sbjct: 3320 PQMTPFKKFNEISLL 3334


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,401,032
Number of Sequences: 237096
Number of extensions: 2758529
Number of successful extensions: 6078
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6075
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)