Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_I10
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 31 0.26
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.4
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.2
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 4.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.6
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 7.4
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 7.4
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 26 7.4
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.7
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 30.7 bits (66), Expect = 0.26
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +1
Query: 136 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 315
DI FD + H+ LI L + R + +IR L N + T +R ++ G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 316 GSALSP 333
GS +SP
Sbjct: 424 GSIVSP 429
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 488 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 604
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 290 VTSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 400
+ +QP+ K PSP F L+ + RS ET+L +A
Sbjct: 47 IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 718 DVGAECHPTVEGGA*IFDLRGPRYGLVEHRDWANG 614
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 276 AFPAPSRHSRSPARLRPLPXYYSVCISTIYPGLRRPIWRSSPMTP-PSTTRVGRRRCFID 452
+ P PS S + L + S+ + R+P RS P+TP TR ++
Sbjct: 75 SLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS-PLTPLKGNTRASPEIRYVS 133
Query: 453 DFRPQLPPWD 482
DF P P++
Sbjct: 134 DFTPPSSPFE 143
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +2
Query: 365 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 535
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 536 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 625
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 670 FDLRGPRYGLVEHRDWANGGGGVIDAPSRERD 575
F+L Y L E +W GG + AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 554 PPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAPKVKYLGAT 685
PP + + P PT N PA T+ IP P V +GAT
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 536 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIP---WAPKVKYLGATLDSRMTF 706
L ++ RP +L+ V+ AP++R ++ P W PK K G R
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466
Query: 707 RPHIKTVRDR 736
R H + V D+
Sbjct: 467 RKHARNVVDQ 476
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +3
Query: 579 LSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*APPSTVG 698
+S L ++ PP A ++P P N PPS G
Sbjct: 61 ISSLKVDVSSPPSTAPGSAGSTPKTTPVSLNAGVPPSNTG 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,650,352
Number of Sequences: 5004
Number of extensions: 83418
Number of successful extensions: 276
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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