Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_I09
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 29 5.0
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 29 5.0
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 29 5.0
AL132846-4|CAB60347.1| 328|Caenorhabditis elegans Hypothetical ... 29 5.0
Z69663-2|CAA93509.2| 819|Caenorhabditis elegans Hypothetical pr... 28 6.6
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 28 6.6
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 28 6.6
Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical pr... 28 8.7
AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein. 28 8.7
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 580 HRHLSLPEFA*GFRSQEADDQYEHQREADQAHARLVQLRQVHGPRVHRS 434
+RH+ L ++A QE DD ++ Q +D + + + GP++ S
Sbjct: 550 YRHMILTKYAEKQHHQENDDDHDEQGGSDDQPSTSSAVHHIKGPKLSSS 598
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 580 HRHLSLPEFA*GFRSQEADDQYEHQREADQAHARLVQLRQVHGPRVHRS 434
+RH+ L ++A QE DD ++ Q +D + + + GP++ S
Sbjct: 553 YRHMILTKYAEKQHHQENDDDHDEQGGSDDQPSTSSAVHHIKGPKLSSS 601
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 580 HRHLSLPEFA*GFRSQEADDQYEHQREADQAHARLVQLRQVHGPRVHRS 434
+RH+ L ++A QE DD ++ Q +D + + + GP++ S
Sbjct: 550 YRHMILTKYAEKQHHQENDDDHDEQGGSDDQPSTSSAVHHIKGPKLSSS 598
>AL132846-4|CAB60347.1| 328|Caenorhabditis elegans Hypothetical
protein Y43D4A.6 protein.
Length = 328
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 195 LLGRSISDVRCKDLGCQQRVVDEVEGNEGQERLGQEPWTLPADVAKVKHLGP 40
LL S ++ D G R + + + ER+G P+ P AK KH GP
Sbjct: 135 LLINSSDALKIADFGLSTRFIVDDKEILLHERIGTTPFMAPELFAKKKHRGP 186
>Z69663-2|CAA93509.2| 819|Caenorhabditis elegans Hypothetical
protein K02B9.2 protein.
Length = 819
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 520 QYEHQREADQAHARLVQLRQVHGP 449
QY +QREAD +RLVQ++ P
Sbjct: 252 QYNYQREADNRSSRLVQIQGHSAP 275
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 347 VPEPQPTEMKPRIRLSLNRXIQTDLLDGDGTVDP 448
V P+ ++PR ++ L + LL+GDGT P
Sbjct: 808 VTGPEANLIQPRGKIELGNPVLMQLLNGDGTEQP 841
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 347 VPEPQPTEMKPRIRLSLNRXIQTDLLDGDGTVDP 448
V P+ ++PR ++ L + LL+GDGT P
Sbjct: 804 VTGPEANLIQPRGKIELGNPVLMQLLNGDGTEQP 837
>Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 613 PEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQY-EHQREADQAH 485
PEHQ+ VA HH+H + ++ A + HQ +A Q H
Sbjct: 59 PEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQPH 102
>Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 613 PEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQY-EHQREADQAH 485
PEHQ+ VA HH+H + ++ A + HQ +A Q H
Sbjct: 59 PEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQPH 102
>Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical
protein W06F12.1a protein.
Length = 634
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 613 PEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQY-EHQREADQAH 485
PEHQ+ VA HH+H + ++ A + HQ +A Q H
Sbjct: 92 PEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQPH 135
>AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein.
Length = 634
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 613 PEHQVVPVAGHHRHLSLPEFA*GFRSQEADDQY-EHQREADQAH 485
PEHQ+ VA HH+H + ++ A + HQ +A Q H
Sbjct: 92 PEHQLAAVAAHHQHHQQLHPSVQYQLVAAATHHNHHQPQAAQPH 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,017,993
Number of Sequences: 27780
Number of extensions: 306074
Number of successful extensions: 977
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -