Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_I05
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    32   0.12 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   5.7  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +3

Query: 63  PNVGGPDMVVRRLYTGVVRSMALYGAPVRCHALTRDNVAAL--RRPQRAIAVRAVRGYRT 236
           PN+GG    +R++  GV+  MA  G PV C     D + A+  R       ++ +  +  
Sbjct: 722 PNMGGKSTYIRQV--GVITVMAQIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMA 779

Query: 237 VSFEAACVLAGTPPWDL 287
              E A +L    P  L
Sbjct: 780 EMLETATILRAATPRSL 796


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 132  YGAPVRCHALTRDNVAALRRPQRAIAVRAVRG 227
            YG    C  LT +N++A  R Q   AVR V G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 407 SRAWSRRLADPAYGRRTVEAIRPVLLDWVNRPRTSHL-PSDAXAHGTRLFRSLPAPHRP 580
           S+ +    A P + R + E  +P LL       +SHL P+ A +  +RL+ S PAP  P
Sbjct: 206 SKKYLEEGAKPPFPRESTE--KP-LLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPP 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,725
Number of Sequences: 5004
Number of extensions: 44016
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)