Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_I03
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.14 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   1.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   2.3  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   3.1  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    26   5.4  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.1  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   9.4  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 23/89 (25%), Positives = 42/89 (47%)
 Frame = +1

Query: 64   DSFHCIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQREVHSRLSDARNDNWHSY 243
            DS   I+LS DLR +  +R +A+   +    +S   +++R + E H+     RND  H  
Sbjct: 2205 DSISAIQLSKDLREIFHLRISALDILNSSTINSLIRKLKRRRTESHT-----RNDKIHES 2259

Query: 244  LEQLAPSHQAYWRLARTLKSETIATMPPL 330
            ++Q     +    + +TL  +    +P L
Sbjct: 2260 IDQFFKDIRKQILIPQTLCDKIEQILPCL 2288


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 118  RNAAIRAYDRLPTHSNR-IRMRRLQREVHSRLSDARNDNWHSYLEQ 252
            +NAA+   D L THS R +   RL      R +   ++ WH  LE+
Sbjct: 1790 QNAALAIMDSLKTHSPRLVEQARLVSHELIRAAILWHEQWHEGLEE 1835


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 309 YSHYASPRYALQANHRHSMTM 371
           YSHY  PRY  QA H + + +
Sbjct: 437 YSHYEVPRYLFQAMHYYDILL 457


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +3

Query: 309 YSHYASPRYALQANHRHSMTMTRLSCWPMHCKSSAPPAL 425
           Y  ++ P+Y ++    + ++++ ++C+P+  K S P  L
Sbjct: 596 YVPHSPPKYTMETYPNNVLSLSTVTCFPLREKFSIPALL 634


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 454 SRQGGRAQSFPAALGRVTPHYHRRS*RRDPQPTT*EGTRLRRHPQPRA*TLASPTDSNVG 633
           SR+GG A +  A   + + +Y R S R+         T    HP+ R  +L +   +   
Sbjct: 115 SRRGGAASNAAAIAAKKSGYYERTSTRKRSLTVPTPRTSFPHHPRSRRFSLKNAAIATSY 174

Query: 634 YNFK 645
           + FK
Sbjct: 175 HKFK 178


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 729 LSVCPAYVYPITSASFHTAGKMQCVIAAFKIVANIAI 619
           ++V P Y YP+T  SF+ A  +   ++ F I+  I I
Sbjct: 529 VNVSP-YTYPVTGPSFNYAVVIMGGVSIFAIICTIVI 564


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 738 KFRLSVCPAYVYPITSASFHTAGKMQCVI 652
           K+    CP  +YP +  +    G +QC+I
Sbjct: 587 KYNHKQCPYIIYPSSLKAVQKLGGLQCII 615


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 318 YASPRYALQANHRHSMTMTRLSCWPMHCKSSAPP 419
           Y +P      N+ HS+    L C    C S  PP
Sbjct: 409 YMAPEVLRGENYNHSVDYWSLGCIMYECLSGFPP 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,667
Number of Sequences: 5004
Number of extensions: 55839
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)