Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_H18
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 29 0.61
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.61
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 28 1.9
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 3.3
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 4.3
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 4.3
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 26 5.7
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 26 7.6
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 7.6
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 26 7.6
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 7.6
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 7.6
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 29.5 bits (63), Expect = 0.61
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 405 VSPVRPCLQHRHQCLERALTSGRSSA-ELLQQALSPFGIRQTTRSTPPSIDNRRAGCPFP 229
+S ++P LQ C R L + + LL+Q S G + + + N G P P
Sbjct: 265 ISSMQPMLQFCKVCKNRILVEHQDTEFHLLKQRQSSMGGKVSAKKKQKQNLNITKGLPLP 324
Query: 228 SRGLC 214
+ G C
Sbjct: 325 NNGAC 329
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.5 bits (63), Expect = 0.61
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 155 PDPYRGTSRPKSWPRHTDGEHSPRLGNGHPARRLSIDGGVLRVVW 289
P P TSRP ++ + D + RRL GGVLRV W
Sbjct: 39 PIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEW 83
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 682 SQNPTHGLPRTPVLYHTGDDSP 617
S PTH L + P++Y+ G DSP
Sbjct: 177 STGPTHVLAKVPLVYNFGLDSP 198
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 384 LQHRHQCLERALTSGRSSAELLQQA 310
LQH+ QCLE AL S L QQA
Sbjct: 876 LQHKRQCLELALQKINSLVILEQQA 900
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +1
Query: 301 WRERLLE--ELGRTPATRQRTLEALVPVLEAWSDRRHGEL---SFRLTQVL 438
W + +LE ELGR P L A++ +++AW+ E+ +F L+ VL
Sbjct: 341 WVQYILEQNELGRNPYNTTNVLRAILWLVKAWTTDISPEIIENAFNLSGVL 391
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 571 GAPTVGTLLARAGRHRSGAR 512
G P + TL+AR RH +GAR
Sbjct: 221 GKPIIVTLIARRSRHFAGAR 240
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 640 RGPEFVGGHGLGSVTWSWRF 699
RGP+F G H L S W+ F
Sbjct: 31 RGPDFFGKHKLNSGPWNLHF 50
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -3
Query: 499 PDVAPFRRLSTDTSRS 452
P V P RR STDTSRS
Sbjct: 879 PKVGPPRRQSTDTSRS 894
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +1
Query: 322 ELGRTPATRQRTLEALVPVLEAWSDRRHGEL-----SFRLTQVL 438
+L RTP+ + L+ + W +R H EL SFRL +V+
Sbjct: 323 QLVRTPSPASLSSSELINISRDWDERLHYELQVSGKSFRLGEVV 366
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +3
Query: 201 IPTENTVLDSGTDTRPV--GC 257
IP ENT++ G +TRP GC
Sbjct: 492 IPDENTIISLGLNTRPTFFGC 512
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 229 ESRTVFSVGMSRPRFRPRGPSVRIRRGHR 143
E +FS S+P F+PR P+ I R R
Sbjct: 427 ECAFLFSPNASQPHFQPRAPTFGIPRNVR 455
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +3
Query: 201 IPTENTVLDSGTDTRPV--GC 257
IP ENT++ G +TRP GC
Sbjct: 492 IPDENTIISLGLNTRPTFFGC 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,444,445
Number of Sequences: 5004
Number of extensions: 80924
Number of successful extensions: 278
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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