Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_H12
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    97   2e-21
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    97   3e-21
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   7.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 44/65 (67%), Positives = 53/65 (81%)
 Frame = +3

Query: 210 LENLTVPVQKSTXKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 389
           + +L  P  K   +EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R
Sbjct: 57  VRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116

Query: 390 RFYKN 404
           RFYKN
Sbjct: 117 RFYKN 121



 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 41/83 (49%), Positives = 60/83 (72%)
 Frame = +3

Query: 546 YKCXKKAFTXASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMXLLKQRQKKAHIME 725
           +K  KKAFT  +KK+ +    +SI ++ +++ +YCSVVRV+AHTQ+      QKKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 726 IQLXGGTIXDKVKWAREHLXKPI 794
           IQ+ GG++ DKV+WAREH  K +
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTV 203



 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 22/29 (75%), Positives = 28/29 (96%)
 Frame = +2

Query: 158 PVHLTAYIGYKAGMTHVVREPDRPGSKIN 244
           PVHLTA++GYKAGMTH+VR+ DRPGSK++
Sbjct: 40  PVHLTAFLGYKAGMTHIVRDLDRPGSKMH 68


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 43/65 (66%), Positives = 53/65 (81%)
 Frame = +3

Query: 210 LENLTVPVQKSTXKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 389
           + +L  P  K   +EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R
Sbjct: 57  VRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116

Query: 390 RFYKN 404
           RFYKN
Sbjct: 117 RFYKN 121



 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 41/83 (49%), Positives = 60/83 (72%)
 Frame = +3

Query: 546 YKCXKKAFTXASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMXLLKQRQKKAHIME 725
           +K  KKAFT  +KK+ +    +SI ++ +++ +YCSVVRV+AHTQ+      QKKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 726 IQLXGGTIXDKVKWAREHLXKPI 794
           IQ+ GG++ DKV+WAREH  K +
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTV 203



 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 22/29 (75%), Positives = 28/29 (96%)
 Frame = +2

Query: 158 PVHLTAYIGYKAGMTHVVREPDRPGSKIN 244
           PVHLTA++GYKAGMTH+VR+ DRPGSK++
Sbjct: 40  PVHLTAFLGYKAGMTHIVRDLDRPGSKMH 68


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 476 LVTICTK*HTLGILIKLSSFERRAVFVEATSTVFRHMLRPDS 351
           ++T+C    T  + + LSS E    FV +T + F   + P S
Sbjct: 328 VITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,975
Number of Sequences: 5004
Number of extensions: 57686
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)