Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_H10
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    51   2e-07
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    50   3e-07

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 2/148 (1%)
 Frame = +2

Query: 170 PVXATVXIGDXVSMXXVXREPXRPGXXINXIEIXXAVXIXHPPXXVXVXVXGYIXTPLGX 349
           PV  T  +G    M  + R+  RPG  ++  EI  AV I   P  V V V GY+ TP G 
Sbjct: 40  PVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGL 99

Query: 350 LXXXXXXXVXMXXHCRXXFYWYWXKXKXNSXXXXXMEXXX*TXXHINRFQIS*SMIRXXX 529
                     +    +  FY  W K K  +      +    T   INR ++   + +   
Sbjct: 100 RSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST-QSINR-ELE-RIKKYCS 156

Query: 530 VVIVLAH--XXXXXXRQRXAHALVXQIH 607
           VV VLAH         Q+ AH +  Q++
Sbjct: 157 VVRVLAHTQIRKTPLAQKKAHLMEIQVN 184


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 2/148 (1%)
 Frame = +2

Query: 170 PVXATVXIGDXVSMXXVXREPXRPGXXINXIEIXXAVXIXHPPXXVXVXVXGYIXTPLGX 349
           PV  T  +G    M  + R+  RPG  ++  EI  AV +   P  V V V GY+ TP G 
Sbjct: 40  PVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGL 99

Query: 350 LXXXXXXXVXMXXHCRXXFYWYWXKXKXNSXXXXXMEXXX*TXXHINRFQIS*SMIRXXX 529
                     +    +  FY  W K K  +      +    T   INR ++   + +   
Sbjct: 100 RSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST-QSINR-ELE-RIKKYCS 156

Query: 530 VVIVLAH--XXXXXXRQRXAHALVXQIH 607
           VV VLAH         Q+ AH +  Q++
Sbjct: 157 VVRVLAHTQIRKTPLAQKKAHLMEIQVN 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,907
Number of Sequences: 5004
Number of extensions: 9002
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)