Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_H04
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 30 1.9
03_01_0245 + 1916718-1917443,1917534-1917719 30 2.5
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 29 5.8
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 5.8
12_01_0395 - 3117315-3118117,3118354-3118478,3118558-3118770,311... 28 7.7
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657... 28 7.7
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 28 7.7
>11_06_0562 +
25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -2
Query: 364 PRAGTTSVPAYVRAQAISRAHATAGQPRRSQARLITPRRTSSMLTT*PELSST 206
P A TSV RA A + A G PRR+ A P ++M + P S+T
Sbjct: 98 PPAAVTSVQGAPRAPASTAATVPQGSPRRTVAAQSAPSGAAAMAQSAPGGSAT 150
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 367 TPRAGTTSVPAYVRAQAISRAHATAGQPRR-SQARLITPRRTS 242
TPR TT YVR ++ +A G+ RR ++ TPRRT+
Sbjct: 134 TPRTPTTQRACYVRGTGTAQGNAKLGRRRRWLRSTGQTPRRTA 176
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -1
Query: 632 YYKSEILEELHPSHHGEVWEQITKIAQALSSIYQYIAGNFP*LREAHVVEYFIC 471
Y K+ +EE S G V+ + I LS+I + + G+ P + HVVE C
Sbjct: 466 YMKTFYMEESTFSFSGNVYVGQSDIFDTLSNIRKKLKGDCPREKIVHVVEKLHC 519
>06_01_1032 +
8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 398 GPDQTFGRMSGDRGSAQYRSDGAGHK*NIRQHELPAVKG 514
GP + G +G RGS +DG+G K N E PA+ G
Sbjct: 510 GPPASEGGSAGQRGSESRMADGSG-KENGNSQENPAIFG 547
>12_01_0395 -
3117315-3118117,3118354-3118478,3118558-3118770,
3118850-3120076,3120537-3120622,3121197-3121223
Length = 826
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 400 SGLFRRSIDGHTPRAGTTSVPAYVRAQAISRAHATAGQPRRSQARLITP---RRTSSML 233
S L S+ + + T +P + + + AH G PR S RLI RR SSML
Sbjct: 143 STLHENSVARNVSSSANTGLP--MDSNCVPSAHIDIGNPRDSSVRLILTGENRRESSML 199
>10_07_0132 +
13263577-13263732,13265391-13265456,13265607-13265705,
13267020-13267084,13267210-13267294,13267389-13267422,
13267539-13267642,13268085-13268408,13269090-13269605
Length = 482
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 513 EVTGYILIYRTKGLRNLGDLFPNLTVVRGMQLFKDFALVIFDNE 644
E +G + ++ KG++NL P++ +V G+ F ++FD +
Sbjct: 234 EASGLLAVF--KGMKNLPVGMPSVLIVTGLTWLSWFPFILFDTD 275
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 498 SSCCRIF--YLWPAPSERY*ADPRSPDILPNV*SGPDCFVGPLTDILPVQ 355
SSCC + Y W A ER + D LPN C DILPV+
Sbjct: 766 SSCCPVTGEYSWVANMERIMKENAIMDELPNKSQVNKCAPKQKVDILPVK 815
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,182,306
Number of Sequences: 37544
Number of extensions: 477628
Number of successful extensions: 1268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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