Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_H03
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   7.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 168  LLGVQQDNVYPQAYIRSEIRTLLSLA 245
            L+ VQ +N YP+  +  E+R  L  A
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTA 1185


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 DCRLHHMAFTNGNTTRNK 494
           DC L  + F N +TT N+
Sbjct: 64  DCMLKKVGFVNADTTFNE 81


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 17  LALAWCTYYILVTL 58
           + LAW  +Y+LV+L
Sbjct: 117 IILAWALFYLLVSL 130


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 17  LALAWCTYYILVTL 58
           + LAW  +Y+LV+L
Sbjct: 170 IILAWALFYLLVSL 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,245
Number of Sequences: 438
Number of extensions: 3523
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)