Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_G22
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 31 0.26
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.46
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.3
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 26 5.6
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 7.5
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 7.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.5
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 9.9
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 9.9
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 9.9
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 9.9
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 30.7 bits (66), Expect = 0.26
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 62 TRSRPRHVTAGVPQGSALSPLLFSLYINDI 151
T +R ++ G PQGS +SP+L ++Y++ +
Sbjct: 410 TENRYKYDIVGTPQGSIVSPILANIYLHQL 439
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.46
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 39 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 215
++D+ RVP P S + K+PPS I + P L+ P RSS +P T
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243
Query: 216 GRRRCFIDDFRPQLPP 263
+ I D PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 48 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 203
+ +++R P+ P R PP R + I I PGL SS TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 506 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 402
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 3.2
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Frame = +1
Query: 223 GVASSTTSDRSYHHGTVVPEVAHRH*PHEKHSGALQKGSPSXTPR*ASLSRLGASITPPP 402
G S +S S +G P + P S A SPS +P S S S +P
Sbjct: 1538 GYTSPFSSAMSPGYGLTSPSYSPSS-PGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTS 1596
Query: 403 PF----AQSRCSTSPYRGPRR-SNI*ASPS--TVG*HSAPTSRRYATVPPSF 537
P + S +TSP P S SPS +PTS Y+ PS+
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.3
Identities = 28/116 (24%), Positives = 43/116 (37%)
Frame = +3
Query: 69 PGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFR 248
P P P APP P S++ P + SP + PS +
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA------VPPMP 198
Query: 249 PQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRNTTLSIPLPTRRVNNPAPAVRPI 416
P++PP A+T + R + G A T+ S P R + P+ +V P+
Sbjct: 199 PKVPPPPLSQAPVANT-SSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPPV 253
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +1
Query: 361 ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPS 534
++L + ++ +S S PY P S SP S ++ RYA PP+
Sbjct: 256 SALHKFATALQQQHQMQKSTSSNIPYANPAPSGFNGSPRNGDVASLASNYRYAKQPPT 313
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 92 GVPQGSALSPLLFSLYINDI 151
G+PQGS LS L Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 458 FDLRGPRYGLVEHRDWANGGGGVIDAPSRERD 363
F+L Y L E +W GG + AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 340 PSXTPR*ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYA 519
PS R AS R A + PPP S +SP P + + ++P + ++P + A
Sbjct: 951 PSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAA-PLA 1009
Query: 520 TVPP 531
VPP
Sbjct: 1010 RVPP 1013
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 743 TFLTXTGSDGYPAKT-GLNNLKGF*VYAGRVSEHYTCIGHDG 621
+ LT TG+ G+PA + G NL GF + + + Y DG
Sbjct: 213 SLLTPTGA-GFPAPSPGTANLLGFHTFDSQFPDQYRFTPRDG 253
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 644 YTCIGHDGAYASFVECHLISKGHFTSP 564
Y +G DG Y S EC S+ FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 9.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 3 LDSSYETTCRTVRSDIESRERVPGPVTSQPE 95
L+S YE + ++ D+ + +PG + S P+
Sbjct: 51 LESKYEVSVLPLKLDVSDLKSIPGVIESLPK 81
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 9.9
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 216 GRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQR-CSSKGVALRNTTLSIPLP 374
G+R FI DS G+G +T+ P A R C G T+SI +P
Sbjct: 264 GQRLHFIPPSFHMQTTCDSCGGTG-TTIPPNSACRSCMGSGTVRERKTVSIDIP 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,345
Number of Sequences: 5004
Number of extensions: 74482
Number of successful extensions: 267
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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