Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_G19
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 28 1.4
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.7
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 26 7.5
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 26 7.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.9
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 9.9
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 219 IFPGTVSSTFDXSPFQRLYFDLTGTETKSNSVTVQSLP 332
I ++SST +P +Y +GT S+S T Q +P
Sbjct: 125 IVSSSISSTVSSTPVSTIYSGTSGTTFVSSSTTYQVIP 162
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 534 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 415
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +2
Query: 602 PXXXPPPXXKXXFPXXXPXTPXIKXXFPPPGXKXPP 709
P PPP P P P + PPP PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.7
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 255 SPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVQS*GLSFFLPPLASKYQS 431
S R+Y L T ++S + PN S + +GY + A+L+ L S +
Sbjct: 2836 SMINRVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLINRFAHVARKHKLPSVCLN 2895
Query: 432 QLTFVGLLLTSQLKES 479
QLT + L +++E+
Sbjct: 2896 QLTKIYTLPNIEIQEA 2911
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 371 SCSILRAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATP 496
+C+ +V + S P P+T C T+ + V +TP
Sbjct: 449 NCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/83 (19%), Positives = 31/83 (37%)
Frame = +2
Query: 371 SCSILRAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATL 550
+C+ +V + S P P+ C T+ V V +TP ++ ++ + +T
Sbjct: 426 NCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTP 485
Query: 551 PXXSRXTSTXIIXXPXXPXXXPP 619
+ T+T P P
Sbjct: 486 VTSTPLTTTNCTTSTSVPYTSTP 508
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 234 VSSTFDXSPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAY 371
VSS+++ P Y+DLT + +N N+ + +G +A+
Sbjct: 262 VSSSYNIPPLGERYYDLTPEDEMTNLCANSIYQNLQTSAQGSLEAF 307
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 475 SFNCDVSSSPTKVNCD----WYFEARGGRKNDSPQD 380
S C + S+P V+ D Y A GGR+ PQD
Sbjct: 65 SLKCHLCSNPIDVHTDPKNTEYIVASGGRRKIEPQD 100
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = +2
Query: 593 PXXPXXXPPPXXKXXFPXXXPXTPXIKXXFPPPGXKXPP 709
P P PPP P P + PP K PP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.9
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 362 RRVSCSILRAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSS 505
R+V S A FPS S +P VDL DV+ E L+TP S
Sbjct: 336 RQVPRSNSYAGAFPSVVSASLPTKVDLN-HQMDVSDEEQRFLSTPLGS 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,473
Number of Sequences: 5004
Number of extensions: 39233
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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