Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_G06
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 291 8e-80
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 290 1e-79
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 2e-05
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.7
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.5
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 26 7.5
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.9
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 9.9
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.9
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 291 bits (714), Expect = 8e-80
Identities = 136/210 (64%), Positives = 165/210 (78%)
Frame = +2
Query: 86 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 265
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 266 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLSVLD 445
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+ V D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 446 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 625
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 626 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 715
G + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 290 bits (712), Expect = 1e-79
Identities = 135/219 (61%), Positives = 168/219 (76%)
Frame = +2
Query: 74 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 253
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 254 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 433
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 434 SVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 613
V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 614 LRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQA 730
LR+RG L R WDV+ DL+FYRDPEE E++E+ K A
Sbjct: 185 LRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKKAAA 223
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 44.4 bits (100), Expect = 2e-05
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Frame = +2
Query: 119 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 292
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 293 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 409
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 410 ----AFREPRLLSVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 577
++ P L+ +L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 578 IGLMWWLLAR 607
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 209 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 385
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 470 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 580
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.2
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -3
Query: 472 SNGLMVLCRVQYTQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 293
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 292 EHISGVLDG 266
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 578 IGLMWWLLAREVLRLRGVLPRDQRWD 655
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 444 TLHKTINPLLKLHMSTFL*LLCATRTP-H*DLWTLLSHATPSLPTLLV 584
+L+K + PLL + F LL + RTP DL+T L P +LL+
Sbjct: 735 SLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLLL 782
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 633 FPVTSAGML--WLICSSTVTLKKVKRM 707
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 722 PWLVVHPFHFLQGHGRRTNQPQ-HPSAGH 639
P+ VHP L+GH R+ Q HP+A +
Sbjct: 120 PYEDVHPIAELKGHSRKVGLVQYHPTAAN 148
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.9
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -2
Query: 293 RTHQRGSRWLRQHEQPEQVFPRYDA 219
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 716 LVVHPFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTS 585
LV+ PF G+R N+ Q +AG+ +++ +L+ T +S
Sbjct: 667 LVLKPFPLKPQDGQRVNKQQSVNAGNVRTNNKHGSLNNNTAPSS 710
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 371 RFTPGAFTNQIQAAFREPRLLSVLDPAQDHQPITEASYVN 490
+FTP +N A R R + H P+ ++ YVN
Sbjct: 132 QFTPRTNSNAFSAPPRRSRGYNTYGQGSGHHPMDKSRYVN 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,712,292
Number of Sequences: 5004
Number of extensions: 82623
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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