Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_G02
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    27   3.3  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   3.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   7.6  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   7.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   7.6  

>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 599 RPPSLFSPENATHPQQRPPXXPXDRSPNHNPNPKYNLNP 715
           +P SL +   ++ PQ R    P    PN  PNPK +  P
Sbjct: 327 QPHSLPASMPSSQPQSRSESLPLTH-PNSEPNPKLDSQP 364


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 110 ANQASPFDKKHGQHSSTSDEIDKSFDKE 193
           +++ASPF+K +  HS  S     S D+E
Sbjct: 408 SSKASPFNKPNSVHSEASRNTPSSIDRE 435


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +2

Query: 581 EIPQRTRPPSLFSPENATHPQQRPPXXP----XDRSPNHNPNPKYN 706
           ++P    P SL SP     P  +PP  P        PN  P+P +N
Sbjct: 160 QVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHN 205


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 588 GISWTD*LDEADTDPEADVD 529
           GISW D LDE D D    V+
Sbjct: 22  GISWLDDLDEKDDDSATSVN 41


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 362 IVPVSLSLPFAPVPLFPSSPG 300
           I+ + L++PF  +PL P+ PG
Sbjct: 126 IIGLPLTIPFILIPLIPNIPG 146


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 356 PVSLSLPFAPVPLFPSSPGIDCNPVSGEVVAQVA 255
           P  L  P  PVP  P+ PG++   +   V + +A
Sbjct: 425 PAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIA 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,551
Number of Sequences: 5004
Number of extensions: 36468
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)