Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_G02
(836 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77665-7|CAI46591.1| 360|Caenorhabditis elegans Hypothetical pr... 31 0.77
U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter... 30 2.3
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 29 3.1
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 3.1
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 3.1
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 3.1
U29244-13|AAC71083.1| 291|Caenorhabditis elegans Collagen prote... 29 3.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen prot... 29 4.1
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 29 5.4
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 28 7.2
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 28 7.2
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 28 7.2
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 28 7.2
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 28 9.5
>Z77665-7|CAI46591.1| 360|Caenorhabditis elegans Hypothetical
protein K02E11.10 protein.
Length = 360
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -1
Query: 347 LSLPFAPVPLFPSSPGIDCNPVSGEVVAQVARRTVRGHSFPAPA 216
++ P AP PLFPS+P P G VA G S+ APA
Sbjct: 51 VTAPSAPAPLFPSAPA-PAIPAGGYAVAPSGGFGGAGGSYAAPA 93
>U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 8 protein.
Length = 452
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 26 PSRLKRKMMNVKAADGSSPASLPQHG-SGANQASPFDKKHGQHSSTSDEIDKSFDKEYER 202
P+ R + + + ADGS+PA LP G S + AS D S + S ++Y
Sbjct: 306 PAAPSRPLAHPEYADGSAPAHLPHSGASDSAAASEVDAPAPHQHRKSHRLRPSHQQQYGD 365
Query: 203 ER 208
E+
Sbjct: 366 EQ 367
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 280 ETGLQSIPGEEGKRGTGAKGRESETGTI 363
+ G Q +PG+ GKRGT G++ E G +
Sbjct: 153 QEGFQGLPGDAGKRGT--PGKDGEPGRV 178
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +2
Query: 599 RPPSLFSPENATHPQQRPPXXPXDRSPNHNPNPKYNLNP 715
+PP P + P PP P P H P+P + P
Sbjct: 69 QPPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRP 107
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/59 (28%), Positives = 21/59 (35%)
Frame = +2
Query: 584 IPQRTRPPSLFSPENATHPQQRPPXXPXDRSPNHNPNPKYNLNPXAXXHQXXPXXSXPP 760
+P +TRPP L P T P + P P P P Y P + PP
Sbjct: 362 LPPQTRPPQL-PPVQITQPPIQTPVQPIFFQTTRPPMPTYATTPATTQFIPKQIYTTPP 419
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/59 (28%), Positives = 21/59 (35%)
Frame = +2
Query: 584 IPQRTRPPSLFSPENATHPQQRPPXXPXDRSPNHNPNPKYNLNPXAXXHQXXPXXSXPP 760
+P +TRPP L P T P + P P P P Y P + PP
Sbjct: 459 LPPQTRPPQL-PPVQITQPPIQTPVQPIFFQTTRPPMPTYATTPATTQFIPKQIYTTPP 516
>U29244-13|AAC71083.1| 291|Caenorhabditis elegans Collagen protein
74 protein.
Length = 291
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 280 ETGLQSIPGEEGKRG-TGAKGRESETGT 360
+TG Q IPG G+RG G KG E G+
Sbjct: 225 DTGAQGIPGAPGERGPRGDKGDNGENGS 252
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = +2
Query: 581 EIPQRTRPPSLFSPENATHPQQRPPXXPXDRSPNHNPNPKYNLNPXAXXHQXXPXXSXPP 760
E PQ + PPS + + PQ P P+ P+P +P P S PP
Sbjct: 168 EDPQPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPP 227
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 617 SPENATHPQQRPPXXPXDRSPNHNPNPKYNLNPXAXXHQXXPXXSXPP 760
S E + PQ P P P+ +P P + +P P S PP
Sbjct: 163 SVEPSEDPQPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPP 210
>AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen protein
54 protein.
Length = 281
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 265 ATTSPETGLQSIPGEEGKRGTGAKGRESETGTI 363
A + E G+ PG+ G RG+GA G G I
Sbjct: 179 AGATGEIGVAGAPGKNGNRGSGAPGAPGPEGPI 211
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 581 EIPQRTRPPSLFSPENATHPQQRPPXXPXDRSPNHNP 691
++PQ+ P PE P+Q+PP R+P +P
Sbjct: 39 QVPQQQNPSGFVMPEQ---PRQQPPPQTWQRTPTMSP 72
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 581 EIPQRTRPPSLFSPENATHPQQRPPXXPXDRSPNHNP 691
++PQ+ P PE P+Q+PP R+P +P
Sbjct: 39 QVPQQQNPSGFVMPEQ---PRQQPPPQTWQRTPTMSP 72
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 226 GKLCPRTVRRATCATTSPETG--LQSIPGEEG 315
G LC TV + CA+T P+ G L PG G
Sbjct: 638 GFLCQETVTPSPCASTDPKNGVCLSCPPGSSG 669
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 226 GKLCPRTVRRATCATTSPETG--LQSIPGEEG 315
G LC TV + CA+T P+ G L PG G
Sbjct: 638 GFLCQETVTPSPCASTDPKNGVCLSCPPGSSG 669
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 226 GKLCPRTVRRATCATTSPETG--LQSIPGEEG 315
G LC TV + CA+T P+ G L PG G
Sbjct: 638 GFLCQETVTPSPCASTDPKNGVCLSCPPGSSG 669
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 226 GKLCPRTVRRATCATTSPETG--LQSIPGEEG 315
G LC TV + CA+T P+ G L PG G
Sbjct: 638 GFLCQETVTPSPCASTDPKNGVCLSCPPGSSG 669
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 587 PQRTRPPSLFSPENATHPQQRPPXXPXDRSPNHNPNPKYN 706
P PP + + + QQ+PP P + P N P ++
Sbjct: 414 PVNANPPPVQNAQPPVQQQQQPPQQPPQQPPQQNLPPVHH 453
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 587 PQRTRPPSLFSPENATHPQQRPPXXPXDRSPNHNPNPKYN 706
P PP + + + QQ+PP P + P N P ++
Sbjct: 400 PVNANPPPVQNAQPPVQQQQQPPQQPPQQPPQQNLPPVHH 439
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 587 PQRTRPPSLFSPENATHPQQRPPXXPXDRSPNHNPNPKYN 706
P PP + + + QQ+PP P + P N P ++
Sbjct: 403 PVNANPPPVQNAQPPVQQQQQPPQQPPQQPPQQNLPPVHH 442
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,648,510
Number of Sequences: 27780
Number of extensions: 225659
Number of successful extensions: 1117
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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