Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_F19
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1147 + 34892415-34893702,34894051-34894676                       35   0.070
05_04_0003 + 17055526-17056122                                         29   3.5  
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213...    29   3.5  
11_01_0411 - 3114959-3115000,3115504-3116703                           29   4.6  
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694...    29   4.6  
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    29   6.1  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.0  

>01_06_1147 + 34892415-34893702,34894051-34894676
          Length = 637

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 33/112 (29%), Positives = 46/112 (41%)
 Frame = +1

Query: 127 TSLSLMIDSLLATYDRESPPXLQNRSQPDPAX*DMLTFVSPSPPLRILADLQMNVDRQTT 306
           TS    +D    T+D E P  +QN +Q         +   P P L++     +N+     
Sbjct: 139 TSTLTFLDLSYNTFDGEIPLRVQNLTQLTALLLQNNSLSGPIPDLQLPKLRHLNLSNNNL 198

Query: 307 ELERRGNGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG 462
                G    +L   P N+  G  + C   LQP PGT  S P    T+PSPG
Sbjct: 199 S----GPIPPSLQRFPANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245


>05_04_0003 + 17055526-17056122
          Length = 198

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = -2

Query: 331 PHSPCVPTQSFVDPH-----SFEDLPVSAAVDSDSRMLA 230
           PH+    T SFVD H     S   LP++A   +D+R+LA
Sbjct: 39  PHASIAETCSFVDDHKLCEESLSSLPLTARAAADARVLA 77


>04_03_1027 -
           21820843-21820878,21820974-21821117,21821220-21821358,
           21821522-21821652,21823615-21823670,21823964-21824258
          Length = 266

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 423 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSI-HIHLKI 274
           E + R W + RLA+   ++  V R   K   P+PP   L+ L++ H+ L++
Sbjct: 47  EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHLLLQV 97


>11_01_0411 - 3114959-3115000,3115504-3116703
          Length = 413

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 396 PRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIHIHLKICQYPQRWTRT 244
           P L +PRQA+ +VP  PA     +P     S L++H+ L      +RW+ T
Sbjct: 264 PVLYLPRQAAPAVPCPPAPPLW-LPSPSVPSSLALHVPLFHASSLERWSPT 313


>02_04_0544 -
           23768808-23768910,23769005-23769030,23769379-23769497,
           23769542-23769668,23769842-23769905,23769981-23770095,
           23770867-23771101,23771196-23771382,23771948-23772305,
           23772432-23772465
          Length = 455

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -1

Query: 383 YHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSTFI*RSASIRS---GGLGLTNVSMSXNA 216
           +HV   Q  +  QPS+ AP  + +     R      SA ++    GGL  T   MS NA
Sbjct: 371 FHVISAQGSKSAQPSSKAPANIAAKPTAYRPPHSKNSADVQDKLFGGLASTGGEMSKNA 429


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 434 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRS 291
           T + S    GGCS    +   PP AFRG+  +   P     + V CR+
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRT 105


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 432 GRGERSPRRWLQPRLAVPRQASTSVPRTP 346
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,616,862
Number of Sequences: 37544
Number of extensions: 408516
Number of successful extensions: 1124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)