Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_F18
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    31   0.82 
AL110479-15|CAB54361.2|  400|Caenorhabditis elegans Hypothetical...    30   1.9  
AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical ...    29   5.8  
AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical ...    29   5.8  

>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 247 LXMNWIDKRLXWNAXEWG 300
           L M W DK+L WN  +WG
Sbjct: 81  LEMQWYDKKLTWNPTDWG 98


>AL110479-15|CAB54361.2|  400|Caenorhabditis elegans Hypothetical
           protein Y105C5B.16 protein.
          Length = 400

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 136 YDRESPRRTPKSXSTXPCIXDMLXXVSPRXPRRIXADLXMNWIDKRLXWNAXEWGCSTWL 315
           YD E+P+R   + +       ++    P+    +  ++   W D RL WNA  W  +T +
Sbjct: 64  YDNEAPKRY--NYTIFLYYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNASAWQNTTMI 121


>AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1a protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 247 LXMNWIDKRLXWNAXEW 297
           L ++W D+RL WN  EW
Sbjct: 107 LKLSWKDRRLRWNPEEW 123


>AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1b protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 247 LXMNWIDKRLXWNAXEW 297
           L ++W D+RL WN  EW
Sbjct: 107 LKLSWKDRRLRWNPEEW 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,177,156
Number of Sequences: 27780
Number of extensions: 174507
Number of successful extensions: 387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)