Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_F17
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 187 1e-47
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 36 0.036
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 36 0.047
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 36 0.047
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 36 0.047
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 36 0.047
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 31 0.77
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 31 0.77
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 30 1.8
U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 7.2
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 28 9.5
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 28 9.5
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 28 9.5
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 28 9.5
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 187 bits (455), Expect = 1e-47
Identities = 84/127 (66%), Positives = 104/127 (81%)
Frame = +2
Query: 77 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 256
MSGG AL EEDV K+LA HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60
Query: 257 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 436
AARA+ A+ENPADV V+S+RP+ QRA+LKFAAHTGAT I GRF+PG TNQIQ F+EPR
Sbjct: 61 AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPR 120
Query: 437 LLIVLDP 457
LL++ DP
Sbjct: 121 LLVISDP 127
Score = 116 bits (279), Expect = 2e-26
Identities = 51/93 (54%), Positives = 68/93 (73%), Gaps = 5/93 (5%)
Frame = +3
Query: 465 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 644
DHQ +TEASYV +PVI+ NT+SPL+ +DI +PCN K SIGLMWW+LARE+L LRG +
Sbjct: 130 DHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKI 189
Query: 645 PRDQRW-----DVVVDLFFYRDPEESEKDEQQA 728
R + +++ DL+FYRDP E+EK+E A
Sbjct: 190 SRQTGFVLEGKEIMPDLYFYRDPTETEKEETGA 222
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 35.9 bits (79), Expect = 0.036
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 378
GC CC + C R T R+ CCT C R C CG
Sbjct: 82 GCGCCCCRPKCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 378
GC CC C R T R+ CCT C R C CG
Sbjct: 83 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 378
GC CC C R T R+ CCT C R C CG
Sbjct: 81 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 122
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 378
GC CC C R T R+ CCT C R C CG
Sbjct: 82 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 378
GC CC C R T R+ CCT C R C CG
Sbjct: 83 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -3
Query: 753 LAVPQPVPWLVVHPFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPT 607
L P+P+P + P H GHG H GHG +H + PT
Sbjct: 163 LPAPEPIP--IPEPAH--TGHGHSHGGHGHSHGGHGHSHGHPAPTPAPT 207
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -3
Query: 753 LAVPQPVPWLVVHPFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPT 607
L P+P+P + P H GHG H GHG +H + PT
Sbjct: 163 LPAPEPIP--IPEPAH--TGHGHSHGGHGHSHGGHGHSHGHPAPTPAPT 207
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +1
Query: 253 SGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCGTFHTRCFY*PDPSC 420
S SCC S C+ + +S+C T +C+ +C C T PSC
Sbjct: 38 SSSSCCSSSSSNSYCIPVCMAQCQSSCTTPICQ-QQCSNQCNQQCTSITISSGPSC 92
>U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical
protein C25F6.8 protein.
Length = 188
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 519 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 626
CNTD+ R + CNT + +G+ + L+AR ++
Sbjct: 49 CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 491 ICQHSCDCFVQHRLPTKICGHCYPM---QHQVFPLYWFD 598
+C+HS + K CGHC PM +HQ P + D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +1
Query: 136 CNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVRHLI 312
C GR+C TC PC++ S TC G SC C+++ E C R
Sbjct: 453 CKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDRCKA 512
Query: 313 TALRSACCTEV-CRAHRCYAYCGT 381
+ + + C+ C+ + T
Sbjct: 513 GTIHLSASNPLGCQPCFCFGHSST 536
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 570 TKSSHSIGLMWWLLA 614
T+ H IG+MWWL A
Sbjct: 72 TRVEHKIGIMWWLCA 86
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +1
Query: 136 CNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVRHLI 312
C GR+C TC PC++ S TC G SC C+++ E C R
Sbjct: 453 CKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDRCKA 512
Query: 313 TALRSACCTEV-CRAHRCYAYCGT 381
+ + + C+ C+ + T
Sbjct: 513 GTIHLSASNPLGCQPCFCFGHSST 536
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +1
Query: 136 CNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVRHLI 312
C GR+C TC PC++ S TC G SC C+++ E C R
Sbjct: 453 CKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDRCKA 512
Query: 313 TALRSACCTEV-CRAHRCYAYCGT 381
+ + + C+ C+ + T
Sbjct: 513 GTIHLSASNPLGCQPCFCFGHSST 536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,107,241
Number of Sequences: 27780
Number of extensions: 501138
Number of successful extensions: 1337
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -