Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_F14
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.69 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   8.5  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 207 VRVHRADTGRSSNELDRXTTELERRGMGL-QHLAG 308
           +R H+   GR+  ELDR  T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/65 (26%), Positives = 18/65 (27%)
 Frame = +1

Query: 679  PXXPXVXKXPXXPXXGXGGPXXEPPXPRPXKXXXTPXTXXPXXRPPXXGVXRXPXLYXPX 858
            P  P     P  P    G P   PP P P      P    P   PP       P +  P 
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS--EIPSIPAPSGAPPVPAPSGIPPVPKPS 1098

Query: 859  XRLXP 873
                P
Sbjct: 1099 VAAPP 1103


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 28  LFCYXFLLTCAIASAAECENATSLSLMIDSLLATYDRE 141
           LFC   + T  + S  EC N     +++D+L   Y ++
Sbjct: 301 LFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQKQ 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,438
Number of Sequences: 5004
Number of extensions: 35622
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)