Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_F14
(913 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.73
05_03_0635 - 16446805-16447716 30 2.9
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.9
08_01_0059 - 394001-394708 29 3.9
08_02_0276 + 15220151-15220465,15222587-15222730,15223179-15223367 29 5.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 5.1
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 5.1
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 9.0
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 31.9 bits (69), Expect = 0.73
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 309 HQPSAAAPFPCVPTQSXVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 145
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>05_03_0635 - 16446805-16447716
Length = 303
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 416 RSPLXDTPGAXERSPPGVVAAAFSSTT 336
R+P D P + SPPG AAA S++T
Sbjct: 196 RAPPPDPPTSLSLSPPGAAAAAISAST 222
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 222 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 133
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>08_01_0059 - 394001-394708
Length = 235
Score = 29.5 bits (63), Expect = 3.9
Identities = 20/76 (26%), Positives = 22/76 (28%)
Frame = +1
Query: 679 PXXPXVXKXPXXPXXGXGGPXXEPPXPRPXKXXXTPXTXXPXXRPPXXGVXRXPXLYXPX 858
P P + P P P PP P P P T P PP L P
Sbjct: 2 PPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPP-----SHPLAPPP 56
Query: 859 XRLXPXXXXPXXPXXP 906
+ P P P P
Sbjct: 57 PHISPPAPVPPPPSPP 72
>08_02_0276 + 15220151-15220465,15222587-15222730,15223179-15223367
Length = 215
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +1
Query: 244 MNWIDXRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTPGGLRSXAPGVSXNGLR 417
M + RL + +G +T R WR D V + AAA S A + G R
Sbjct: 1 MEGVGARLGRTSARYGTTTTFTGPVRKWRKDWVPVAAAAAAAAAAASAASSTAGAGSR 58
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/62 (27%), Positives = 19/62 (30%)
Frame = +1
Query: 679 PXXPXVXKXPXXPXXGXGGPXXEPPXPRPXKXXXTPXTXXPXXRPPXXGVXRXPXLYXPX 858
P P + P P G +PP P P P P PP R L P
Sbjct: 83 PPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPP 142
Query: 859 XR 864
R
Sbjct: 143 PR 144
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 336 VRPPQAFRGHQPSAAAPFPCVPTQSXVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 169
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 94 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 249
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,346,399
Number of Sequences: 37544
Number of extensions: 333046
Number of successful extensions: 1137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -