Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_F06
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0757 + 24267599-24268882                                         29   3.5  
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730...    29   6.2  

>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 306 SWN-AGEWGCSTXXVSSERLWRPDVVLLNAAAPTVGDYA 419
           SW  AG W C     + ++ WRP    L   APT  DY+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWRPSSAGLLGPAPT-ADYS 385


>08_02_1476 -
           27372288-27372310,27372508-27372586,27372818-27373085,
           27373346-27373410,27373611-27373757
          Length = 193

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 429 GRGERSPRRWVQPRLAVPRQASTSV 355
           G   R PRRW + R  +P QA+T V
Sbjct: 27  GHRRRHPRRWTRVRDQLPTQATTKV 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,208
Number of Sequences: 37544
Number of extensions: 314863
Number of successful extensions: 703
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)