Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_F06
(846 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 45 1e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 42 5e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 42 7e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 39 5e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 38 9e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 38 9e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 38 9e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 37 3e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 36 6e-04
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 33 0.004
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 30 0.023
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 24 2.0
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.2
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.8 bits (101), Expect = 1e-06
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEW-GCSTXXVSSERLWRPDVVLLNAAAPTV-GDYALRARVSNNG 446
L + W+D L WN E+ G ++ +LW+PD+++ N+A G Y V++NG
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNG 165
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.8 bits (101), Expect = 1e-06
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEW-GCSTXXVSSERLWRPDVVLLNAAAPTV-GDYALRARVSNNG 446
L + W+D L WN E+ G ++ +LW+PD+++ N+A G Y V++NG
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNG 165
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEW-GCSTXXVSSERLWRPDVVLLNAAAPTV-GDYALRARVSNNG 446
L + W+D L WN E+ G ++ +LW+PD+++ N+A G Y V++NG
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNG 97
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEW-GCSTXXVSSERLWRPDVVLLNAAAPTV-GDYALRARVSNNG 446
L + W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++G
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEW-GCSTXXVSSERLWRPDVVLLNAAAPTV-GDYALRARVSNNG 446
L + W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++G
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEW-GCSTXXVSSERLWRPDVVLLNAAAPTV-GDYALRARVSNNG 446
L + W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++G
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEW-GCSTXXVSSERLWRPDVVLLNAAAPTV-GDYALRARVSNNG 446
L + W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++G
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEW-GCSTXXVSSERLWRPDVVLLNAAAPTV-GDYALRARVSNNG 446
L + W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++G
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDG 97
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 42.3 bits (95), Expect = 5e-06
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEWG-CSTXXVSSERLWRPDVVLLNAAAPTV-GDYALRARVSNNG 446
L + W D + WN ++G + RLW+PDV++ N+A G Y V NNG
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNG 134
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 41.9 bits (94), Expect = 7e-06
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 288 WIDXRLSWNAGEW-GCSTXXVSSERLWRPDVVLLNAAAPTVGDYALRARV 434
W D L WNA E+ G V R+WRPD +L N A P + V
Sbjct: 62 WTDHHLKWNASEFAGIRVIRVPYNRVWRPDTILYNNADPQYSSAVINTNV 111
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 39.9 bits (89), Expect = 3e-05
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 288 WIDXRLSWNAGEWG-CSTXXVSSERLWRPDVVLLNAA 395
W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 77 WNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.1 bits (87), Expect = 5e-05
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 285 NWIDXRLSWNAGEWG-CSTXXVSSERLWRPDVVLLNAA 395
+W D +L W+ E+G V S+ +WRPD+VL N A
Sbjct: 80 SWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.3 bits (85), Expect = 9e-05
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 285 NWIDXRLSWNAGEWG-CSTXXVSSERLWRPDVVLLNAA 395
+W D +L W E+G V S+ +WRPD+VL N A
Sbjct: 84 SWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.3 bits (85), Expect = 9e-05
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 285 NWIDXRLSWNAGEWG-CSTXXVSSERLWRPDVVLLNAA 395
+W D +L W E+G V S+ +WRPD+VL N A
Sbjct: 84 SWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 38.3 bits (85), Expect = 9e-05
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 288 WIDXRLSWNAGEWG-CSTXXVSSERLWRPDVVLLNAA 395
W D +L WN E+G V SE +W PD+VL N A
Sbjct: 90 WNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 36.7 bits (81), Expect = 3e-04
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEWGCSTXX-VSSERLWRPDVVLLNAA 395
L W D + W+ E+G T V SE +W PD+VL N A
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 35.5 bits (78), Expect = 6e-04
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 288 WIDXRLSWNAGEWG-CSTXXVSSERLWRPDVVLLNAAAPTVGDYALR 425
W D +L W+ ++G + +++W+PD+VL N A G+Y +R
Sbjct: 83 WTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNAD---GNYEVR 126
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 32.7 bits (71), Expect = 0.004
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Frame = +3
Query: 285 NWIDXRLSWNAGEWGCSTXXVSSERLWRPDVVLLNAAAPTVGDYAL---RARVSNNGLRL 455
+W D RLS+ S ER+WRPD N V + R+S +G L
Sbjct: 92 SWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDIL 151
Query: 456 LS*RAWTSNTPXPMPXXXWPXXXXTCXFXSGS 551
S R T PM +P +C GS
Sbjct: 152 YSMRL-TIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 30.3 bits (65), Expect = 0.023
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Frame = +3
Query: 285 NWIDXRLSWNAGEWGCSTXXVSSERLWRPDVVLLN---AAAPTVGDYALRARVSNNGLRL 455
+W+D RL++ G+ + R+W+PD N + T+ R+ +G L
Sbjct: 60 SWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVL 119
Query: 456 LS*RAWTSNTPXPMPXXXWPXXXXTCXFXSGS 551
S R T PM +P C GS
Sbjct: 120 YSSRL-TIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 23.8 bits (49), Expect = 2.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 276 LXMNWIDXRLSWNAGEWGCSTXXVSSERLWRPDVVLLN 389
L W D RL+++ E + +E++W PD N
Sbjct: 88 LNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTFFAN 125
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 341 PSAAAPFPCVPTQS 300
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,653
Number of Sequences: 438
Number of extensions: 2879
Number of successful extensions: 40
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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