Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_E09
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 168 7e-43
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 165 5e-42
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 31 0.27
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 27 2.5
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 7.7
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 168 bits (409), Expect = 7e-43
Identities = 96/194 (49%), Positives = 116/194 (59%), Gaps = 6/194 (3%)
Frame = +1
Query: 163 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 342
+G K L ME YV+KRR+DG H+INL +TWEKLVLAAR + IENPADV VISSRP+G
Sbjct: 28 IGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGH 87
Query: 343 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP-GTRPSTHY*SF----- 504
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP + SF
Sbjct: 88 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPV 147
Query: 505 ICQHSCDCFVQHRLPTKICGHCYPMQHQVFPLYWFDVVVVGT*SAEASWCASRDQRWDVV 684
I D + H + ++ L W+ ++ SR W+V+
Sbjct: 148 IALCDTDSILNH---VDVAIPINNKGYKSIGLAWY---LLAREVLRLRGNISRTTAWEVM 201
Query: 685 VDLFFYRDPEESER 726
DL+FYRDPEE ER
Sbjct: 202 PDLYFYRDPEEIER 215
Score = 88.2 bits (209), Expect = 1e-18
Identities = 44/65 (67%), Positives = 50/65 (76%)
Frame = +2
Query: 479 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 658
D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG +
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNI 192
Query: 659 PVTSA 673
T+A
Sbjct: 193 SRTTA 197
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 108 VLALNEEDVTKMLAATTHLGAENV 179
VL ++D+ +LAA +H+G++N+
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNL 33
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 165 bits (402), Expect = 5e-42
Identities = 94/197 (47%), Positives = 117/197 (59%), Gaps = 9/197 (4%)
Frame = +1
Query: 163 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 342
+G K L M+ YV+KRR+DG H++NL +TWEKLVLAAR + IENPADV V+S+R +G
Sbjct: 27 IGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGH 86
Query: 343 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP-GTRPSTHY*SF----- 504
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP + SF
Sbjct: 87 RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPV 146
Query: 505 ICQHSCDCFVQH---RLPTKICGHCYPMQHQVFPLYWFDVVVVGT*SAEASWCASRDQRW 675
I D + H +PT G + L W+ ++ SR W
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKG------RKSIGLIWY---LLAREVLRVRGTLSRSAPW 197
Query: 676 DVVVDLFFYRDPEESER 726
DV+ DL+FYRDPEE ER
Sbjct: 198 DVMPDLYFYRDPEEVER 214
Score = 88.2 bits (209), Expect = 1e-18
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +2
Query: 479 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 658
D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTL 191
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 96 GGLDVLALNEEDVTKMLAATTHLGAENV 179
G ++L +ED+ ++LAA H+G++N+
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNL 32
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 497 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 631
EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 232 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 408
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 494 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 604
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 679 HPSAGHGKHTTKPQHFTCQQP-PHQTNRVGRLGV 581
HPS H + P F+ Q P P+ VG +G+
Sbjct: 61 HPSTSSTSHISSPSAFSVQNPNPNDAPFVGNIGL 94
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 7.7
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +1
Query: 106 TCSPSTRKMSPKCLLQPPILGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAV 285
TC ++S + P+LG + S + T++ RA+G + + T + A V
Sbjct: 443 TCVMLFSRVSTIAVTVSPVLG---IISSIITWLVVARAEGGKTLTIETTGANNPMLAGNV 499
Query: 286 VAIENPADVFVISSRPFGQR 345
V + +PA +I S F ++
Sbjct: 500 VGLLSPALYILILSIIFPEK 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,592,959
Number of Sequences: 5004
Number of extensions: 78895
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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