Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_D24
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    43   3e-04
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    42   7e-04
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    40   0.003
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    36   0.047
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    33   0.33 
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    29   5.4  

>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 27/97 (27%), Positives = 48/97 (49%)
 Frame = +1

Query: 370 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 549
           L G PI   +  + LG  +   + F  H K   + A F L  ++    + +K  +   + 
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192

Query: 550 LYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 660
           LYKT IRP + Y +VV +   ++  K+++ +Q+ F R
Sbjct: 193 LYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 26/97 (26%), Positives = 48/97 (49%)
 Frame = +1

Query: 370 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 549
           L G PI   +  + LG  +   + F  H +   + A F L  ++    + +K  +   + 
Sbjct: 166 LDGYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---IL 222

Query: 550 LYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 660
           LYKT IRP + Y +VV +   ++  K+++ +Q+ F R
Sbjct: 223 LYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 26/84 (30%), Positives = 41/84 (48%)
 Frame = +1

Query: 382 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 561
           PI   +  + LG+  D  +TF+PHIK +    +  L R   +L S   L       L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244

Query: 562 CIRPVMTYASVVFAHAARTHLKSL 633
            I P++ Y S V++    + L +L
Sbjct: 245 YILPLIEYGSAVYSPKPSSSLSTL 268


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 26/76 (34%), Positives = 37/76 (48%)
 Frame = +1

Query: 376  GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 555
            G PI   S V+ LG+  D  + F  HI  V   +   + R   +L + S  S +    LY
Sbjct: 967  GVPITPSSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLY 1023

Query: 556  KTCIRPVMTYASVVFA 603
            KT + P+M Y S V+A
Sbjct: 1024 KTYVAPIMNYCSEVYA 1039


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/64 (21%), Positives = 34/64 (53%)
 Frame = +3

Query: 93  HINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSA 272
           ++ D+P   +T L  +ADD +I    +K+     ++Q+ +  + ++ ++  + I+  KS 
Sbjct: 547 YLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKST 606

Query: 273 AVLF 284
             +F
Sbjct: 607 VTVF 610


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 251 VYSPLPEPLSHGGYCNLESPMKQRHLPTRVVDS 153
           VYSP+P P  H G   + S M      T V DS
Sbjct: 13  VYSPVPSPSYHNGRSMVSSDMYTYTTDTNVTDS 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,946,243
Number of Sequences: 27780
Number of extensions: 408174
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)