Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_D10
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 156 4e-39
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 89 5e-19
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 48 2e-06
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 33 0.050
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 29 0.81
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 27 3.3
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 7.5
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 10.0
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos... 25 10.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 10.0
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 25 10.0
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 156 bits (378), Expect = 4e-39
Identities = 73/142 (51%), Positives = 97/142 (68%)
Frame = +1
Query: 244 ASRSTTVYLVDRRIDMVPELLSSNLCSLRGGEERLAFSCVWEMDENANVLSTKFHKSIIK 423
ASR TTVYLVD+RIDM+P LL ++LCSLR ER AFSC+WEMDENAN++ F KS+I
Sbjct: 553 ASRGTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANIIKVHFTKSVIA 612
Query: 424 SKAAMTYEEAQIAIDDSSRKDEIAKSXXXXXXXXXXXXXXXXDSGALLLASPEIRFQVDS 603
SK A +Y +AQ IDD +D + + D GAL LASPE+R Q D+
Sbjct: 613 SKEAFSYADAQARIDDQKMQDPLTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDN 672
Query: 604 ETHDPIEVQAKKIVDTNSMVQE 669
ET DP++V+ K++++TNS+V+E
Sbjct: 673 ETSDPMDVEIKQLLETNSLVEE 694
Score = 90.6 bits (215), Expect = 2e-19
Identities = 45/86 (52%), Positives = 59/86 (68%), Gaps = 5/86 (5%)
Frame = +2
Query: 26 NDWTIPEEER----QKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHI 193
++W +P ++ + R D RD +CS+DPPGC DIDDALHA L + + YEVGVHI
Sbjct: 480 HNWKVPADKTHPLWKNRKDFRDKLICSIDPPGCQDIDDALHACVLPNGN----YEVGVHI 535
Query: 194 ADVTHFVKPDTALDKEAL-RGQLQYI 268
ADVTHFVKP+T++D EA RG Y+
Sbjct: 536 ADVTHFVKPNTSMDSEAASRGTTVYL 561
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 89.4 bits (212), Expect = 5e-19
Identities = 43/74 (58%), Positives = 53/74 (71%)
Frame = +2
Query: 23 PNDWTIPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADV 202
P+DW I EE +KR DLR+ + ++DP D+DDA+ R L + TYEVGVHIADV
Sbjct: 428 PDDWIISHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDNG----TYEVGVHIADV 483
Query: 203 THFVKPDTALDKEA 244
THFVKPD+ALDKEA
Sbjct: 484 THFVKPDSALDKEA 497
Score = 79.0 bits (186), Expect = 8e-16
Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 14/156 (8%)
Frame = +1
Query: 244 ASRSTTVYLVDRRIDMVPELLSSNLCSLRGGEERLAFSCVWEMDENANVLSTK-FHKSII 420
ASR+TTVYLV + I M+P LL LCSL ERLAFS W++D N + + F K++I
Sbjct: 498 ASRATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDSNGKEIGKRWFGKTVI 557
Query: 421 KSKAAMTYEEAQIAIDDSSRKDEIAK-------------SXXXXXXXXXXXXXXXXDSGA 561
K+ A + Y EAQ I+ S D + K S GA
Sbjct: 558 KTCARLAYSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSILTLCEISRKLRKDRFAKGA 617
Query: 562 LLLASPEIRFQVDSETHDPIEVQAKKIVDTNSMVQE 669
+ + S E++FQ+D E P + + + D N +++E
Sbjct: 618 VEINSTELKFQLD-EYGMPNKCEVYEQTDANHLIEE 652
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 48.0 bits (109), Expect = 2e-06
Identities = 32/69 (46%), Positives = 40/69 (57%)
Frame = +2
Query: 38 IPEEERQKRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFVK 217
IP EE QKR +LRD + G D ALH GS DG+ T +G+H+ADV ++VK
Sbjct: 597 IPAEELQKRYNLRDKLTFMI---GTRDY--ALHIDT-GSIDGVIT--LGIHVADVAYYVK 648
Query: 218 PDTALDKEA 244
D LD EA
Sbjct: 649 QDMPLDDEA 657
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 33.1 bits (72), Expect = 0.050
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 92 SVDPPGCTD-IDDALHARRLGSSDGLATYEVGVHIADVTHFVKPDTALDKEALR 250
+++ TD + A H R +S G Y VG+H+ DV+ ++P + LD+E R
Sbjct: 618 NINSSSATDFVSSAFHIRP--TSTG---YHVGIHVTDVSRVIEPGSPLDRELQR 666
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 29.1 bits (62), Expect = 0.81
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 59 KRVDLRDVCVCSVDPPGCTDIDDALHARRLGSSDGLATYEVGVHIADVTHFV 214
+RVDLR + + D +IDDA+ LG S+ + +H+A+ T V
Sbjct: 502 QRVDLRHLKAFAFDSSSTKEIDDAISVEELGMSNSW----LHIHVANPTSTV 549
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 95 VDPPGCTDIDDALHARRL-GSSDGLATYEVGVHIADVTHFVKPDTAL 232
VDPP + +L G G TY++ H+ADV +K + A+
Sbjct: 599 VDPPSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAV 645
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 176 EVGVHIADVTHFVKPDTALDKEALRGQLQYISSTG 280
EVG H A FV P +A ALR L+ +++G
Sbjct: 632 EVGKHTAVTLKFVLPSSAYATMALREALRTATASG 666
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 687 YGLTT*FLYH*VSVNYLLGLHFDWVVSLRVYL 592
Y L+ FL + + +LLGL F WV +L +++
Sbjct: 977 YILSVPFLTNYFELKFLLGLKFYWVSALILFI 1008
>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 367 EMDENANVLSTKFHKSIIKSKAAMTYE 447
E+ +N + ST+FH S I +++ TYE
Sbjct: 161 ELADNLIMPSTQFHGSFIYNQSIKTYE 187
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 335 PPLSEHRFELSNSGTISILLSTRYTVVDLEAPPCP 231
PPL+ + LS G + LS+ + + PPCP
Sbjct: 929 PPLNSGKPALSKEGGLLSALSSYLSSYANDEPPCP 963
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 173 TSPARRWSPACGREARRLCPCTRED 99
T P RR + AC R RR CT D
Sbjct: 6 TGPRRRTAVACDRCRRRKIRCTGSD 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,726
Number of Sequences: 5004
Number of extensions: 52590
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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