Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_D10
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = -1

Query: 353 KASLSSPPLSEHRFELSNSGTISILLSTRYTVVDLEAPPCPG 228
           K  ++ PP SE RFE       S +    Y    +   P  G
Sbjct: 154 KMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISG 195


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 77  DVC--VCSVDPPGCTDIDDALHARRLGSSD 160
           DVC     + P G T+ID A+   + GS+D
Sbjct: 646 DVCRGKLKLPPDGRTEIDVAIKTLKPGSAD 675


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 571  ASPEIRFQVDSETHDPIEVQAKKIVDTNSMV 663
            +SP+ R  V+    D + V    ++ TN+ V
Sbjct: 1288 SSPQPRLTVNHAYRDAVTVPGNNLIATNTTV 1318


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 506 AYSTNSLRSLRXSDWTVVPCYWPRPR 583
           A+++ S  S+   +   +PC  PRP+
Sbjct: 609 AHASASEESVHSMELRTLPCLLPRPK 634


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 131 LHARRLGSSDGLATYE 178
           LH R +G  DG  TY+
Sbjct: 165 LHIRDVGPEDGYKTYQ 180


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 506 AYSTNSLRSLRXSDWTVVPCYWPRPR 583
           A+++ S  S+   +   +PC  PRP+
Sbjct: 577 AHASASEESVHSMELRTLPCLLPRPK 602


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,437
Number of Sequences: 438
Number of extensions: 3784
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)