Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_D08
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 243 3e-65
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 241 8e-65
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 195 6e-51
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 188 1e-48
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 184 2e-47
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 160 2e-40
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 159 4e-40
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 142 7e-35
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 134 2e-32
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 132 6e-32
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 128 9e-31
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 124 2e-29
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 120 3e-28
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 103 4e-23
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 99 7e-22
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 97 3e-21
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 96 6e-21
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 95 1e-20
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 86 5e-18
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 64 2e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 0.002
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 31 0.26
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 29 0.61
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 29 1.1
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 28 1.4
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 4.3
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 5.7
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 7.5
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 25 9.9
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 243 bits (594), Expect = 3e-65
Identities = 123/237 (51%), Positives = 168/237 (70%), Gaps = 7/237 (2%)
Frame = +2
Query: 2 TGSGGQTVSLLNVMMDLKKCCNHPYLFPVAAEEAPLGPH-GNYDT-QALIKASGKLVLLS 175
T GQ +SLLN++++LKK NHPYLFP AAE+ +G DT + +I SGK+VLL
Sbjct: 652 TDGRGQ-LSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLD 710
Query: 176 KMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNAPG 355
K+L++LK GHRVLIFSQM +ML+IL +++ GY Y+R+DG I ++R+ +ID FNAP
Sbjct: 711 KLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPD 770
Query: 356 AQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVT 535
+ FVF LSTRAGGLGINL TADTVII+DSDWNP D+QA +RAHRIGQ N V +YRF++
Sbjct: 771 SPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLS 830
Query: 536 RNSVEERVTQVAKRKMMLTHLVVRPGM-----GGKGATFTKQELDDILRFGTEELXK 691
+++VEE + + A+RKM+L + ++ G+ K + QEL IL+FG + K
Sbjct: 831 KDTVEEDILERARRKMILEYAIISLGVTEKSKNSKNDKYDAQELSAILKFGASNMFK 887
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 241 bits (590), Expect = 8e-65
Identities = 119/237 (50%), Positives = 161/237 (67%), Gaps = 9/237 (3%)
Frame = +2
Query: 8 SGGQTVSLLNVMMDLKKCCNHPYLFPVAAEE--APLGPHGNYDT--QALIKASGKLVLLS 175
S G +SLLN++++LKK NHPYLF E + G D + LI SGK+VLL
Sbjct: 637 SSGSQISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRRDEVLKGLIMNSGKMVLLD 696
Query: 176 KMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNAPG 355
K+L +L+ GHRVLIFSQM +MLDIL D+L GY ++R+DG + +R+ +ID FNAP
Sbjct: 697 KLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPN 756
Query: 356 AQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVT 535
+ FVF LSTRAGGLGINL TADTVII+DSDWNP D+QA +RAHRIGQ N VM+YR ++
Sbjct: 757 SPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLS 816
Query: 536 RNSVEERVTQVAKRKMMLTHLVVRPGM-----GGKGATFTKQELDDILRFGTEELXK 691
++++EE V + A+RKM+L + ++ G+ K F+ +EL IL+FG + K
Sbjct: 817 KDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGASNMFK 873
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 195 bits (476), Expect = 6e-51
Identities = 104/232 (44%), Positives = 152/232 (65%), Gaps = 1/232 (0%)
Frame = +2
Query: 2 TGSGGQ-TVSLLNVMMDLKKCCNHPYLFPVAAEEAPLGPHGNYDTQALIKASGKLVLLSK 178
+ SGGQ T SL N++M L+K HPY++ E+ L P+ ++L +AS K ++L
Sbjct: 821 SSSGGQRTTSLNNILMQLRKTLAHPYIYSPDIEDRNL-PY-ELAMRSLEEASCKFLILRL 878
Query: 179 MLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNAPGA 358
++ +L +GHR+L+FSQ + LDILED+ E + Y R DG + RQ AID FNAP +
Sbjct: 879 LVPKLITRGHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNS 938
Query: 359 QQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 538
+ F LSTRAGG+GINLA+ADTVII D D+NPH D+QA +RAHR GQ KV+++ TR
Sbjct: 939 ELSCFLLSTRAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTR 998
Query: 539 NSVEERVTQVAKRKMMLTHLVVRPGMGGKGATFTKQELDDILRFGTEELXKK 694
+SVEE++ Q A++K++L HL+V ++++L+ ILR G L ++
Sbjct: 999 DSVEEKIIQNAQKKLVLDHLIVESLDQNHN---SEKDLESILRHGARALFEE 1047
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 188 bits (457), Expect = 1e-48
Identities = 97/208 (46%), Positives = 134/208 (64%), Gaps = 1/208 (0%)
Frame = +2
Query: 29 LLNVMMDLKKCCNHPYLFPVAAEEAPLGPHG-NYDTQALIKASGKLVLLSKMLKQLKEQG 205
L N +M LKK CNHP++F E + P G NYD L + SGK LL ++L +L G
Sbjct: 697 LQNTVMQLKKICNHPFVFEDV--ERSIDPTGFNYDM--LWRVSGKFELLDRILPKLFRSG 752
Query: 206 HRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNAPGAQQFVFRLST 385
HR+L+F QMT++++I+ED+L ++Y R+DG R + + FN P A+ +F LST
Sbjct: 753 HRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLST 812
Query: 386 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQ 565
RAGGLG+NL TADTVII+DSDWNPH D+QA RAHRIGQ +V IYR +T SVEE +
Sbjct: 813 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILA 872
Query: 566 VAKRKMMLTHLVVRPGMGGKGATFTKQE 649
A+ K+ + V++ G +T ++E
Sbjct: 873 RAQYKLDIDGKVIQAGKFDNKSTPEERE 900
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 184 bits (447), Expect = 2e-47
Identities = 94/217 (43%), Positives = 135/217 (62%), Gaps = 2/217 (0%)
Frame = +2
Query: 5 GSGGQT--VSLLNVMMDLKKCCNHPYLFPVAAEEAPLGPHGNYDTQALIKASGKLVLLSK 178
G G+T L N +M LKK CNHP++F E + P G + L +A+GK LL +
Sbjct: 1138 GEKGKTGIKGLQNTVMQLKKICNHPFIFEDV--ERAIDPSGT-NVDLLWRAAGKFELLDR 1194
Query: 179 MLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNAPGA 358
+L +L GH+ L+F QMT+++ I+ED+L + +KY R+DG R + +FN P +
Sbjct: 1195 ILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKS 1254
Query: 359 QQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 538
++F LSTRAGGLG+NL TADTVII+D+DWNPH D+QA RAHRIGQ +V I R +T
Sbjct: 1255 DVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITE 1314
Query: 539 NSVEERVTQVAKRKMMLTHLVVRPGMGGKGATFTKQE 649
S+EE + A+ K+ L V++ G +T ++E
Sbjct: 1315 KSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEERE 1351
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 160 bits (389), Expect = 2e-40
Identities = 80/157 (50%), Positives = 105/157 (66%)
Frame = +2
Query: 143 IKASGKLVLLSKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIR 322
I SGKL L K+L +LK HRVLI+ QMT+M+D++E++L YKY R+DG + R
Sbjct: 1425 IADSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQR 1484
Query: 323 QEAIDRFNAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 502
++ + + + FVF LSTRAGGLGINL ADTVI YDSDWNP D QA RAHRIGQ
Sbjct: 1485 RDMVTEWQTR-PELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQ 1543
Query: 503 ANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPG 613
+V +YRF+TR ++EER+ AK K + +V+ G
Sbjct: 1544 QKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGG 1580
Score = 32.3 bits (70), Expect = 0.086
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 11 GGQTV-SLLNVMMDLKKCCNHPYLFPVAAEEAPL 109
G TV S++N++M +K CNHP LF +PL
Sbjct: 1120 GDDTVASIMNLVMQFRKVCNHPDLFEREDVRSPL 1153
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 159 bits (386), Expect = 4e-40
Identities = 91/190 (47%), Positives = 116/190 (61%), Gaps = 2/190 (1%)
Frame = +2
Query: 128 DTQALIKASGKLVLLSKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGI 307
D + L GKL +L ++LK L GHRVLIF+QMTK+LDILE FL G++Y R+DG
Sbjct: 982 DKRLLQYDCGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGAT 1041
Query: 308 TGTIRQEAIDRFNAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRA 487
RQ +RFN VF LSTR+GGLGINL ADTVI YDSDWNP D QA R+
Sbjct: 1042 KIEQRQILTERFNNDDKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRS 1100
Query: 488 HRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGAT--FTKQELDDI 661
HRIGQ V IYR ++ +VE + + A +K ML +V++ GG+ T F K ++ D+
Sbjct: 1101 HRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQ---GGEFTTEWFRKADVLDL 1157
Query: 662 LRFGTEELXK 691
E L K
Sbjct: 1158 FDLDDESLKK 1167
Score = 31.5 bits (68), Expect = 0.15
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 8 SGGQTVSLLNVMMDLKKCCNHPYL 79
+ G +S++N +M L+K CNHP L
Sbjct: 722 ASGNFMSIINCLMQLRKVCNHPNL 745
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 142 bits (343), Expect = 7e-35
Identities = 68/146 (46%), Positives = 100/146 (68%)
Frame = +2
Query: 152 SGKLVLLSKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEA 331
SGK+ +L ++L ++KE+G R+L+FSQ T+MLDILE L+ Y R+DG +RQ+
Sbjct: 923 SGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDI 982
Query: 332 IDRFNAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANK 511
ID+F+ VF LST+AGG GINLA A+ VI+YD +NP +D+QA RAHR+GQ +
Sbjct: 983 IDQFHKE-EDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVRE 1041
Query: 512 VMIYRFVTRNSVEERVTQVAKRKMML 589
V + R +T N++EE + ++A K+ L
Sbjct: 1042 VTVIRLITDNTIEEYIQKLANTKLAL 1067
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 134 bits (323), Expect = 2e-32
Identities = 79/188 (42%), Positives = 110/188 (58%), Gaps = 2/188 (1%)
Frame = +2
Query: 50 LKKCCNHPYLFPVAAEEAPLGPHGNYDTQALIKASGKLVLLSKMLKQLKEQGHRVLIFSQ 229
L+K CNHP L V E NY + SGKL ++ +L K+QGHR L+FSQ
Sbjct: 595 LRKICNHPDL--VTREYLLHKEDYNYGDP---EKSGKLKVIRALLTLWKKQGHRTLLFSQ 649
Query: 230 MTKMLDILEDFLEG-EGYKYERIDGGITGTIRQEAIDRFNAPGAQQF-VFRLSTRAGGLG 403
+MLDILE L+ Y R+DG + +RQ+ +D FN + F VF L+TR GGLG
Sbjct: 650 TRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFNKN--EYFDVFLLTTRVGGLG 707
Query: 404 INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKM 583
+NL AD VI++D DWNP D QA RA R+GQ V++YR +T ++EE++ K
Sbjct: 708 VNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQ 767
Query: 584 MLTHLVVR 607
LT+ +++
Sbjct: 768 FLTNKILK 775
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 132 bits (319), Expect = 6e-32
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 12/212 (5%)
Frame = +2
Query: 5 GSGGQTVSLLNVMMDLKKCCNHPYLFPVAAE----EAPLGPHG-------NYDTQALIKA 151
G+G Q + + + LKK CNHP L + + EA L P G D
Sbjct: 553 GTGSQPLKAIGL---LKKICNHPDLLNLTEDLEGCEA-LFPPGFIPRELRGRDRNIDSSL 608
Query: 152 SGKLVLLSKMLKQLKEQ-GHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQE 328
SGK+++L +ML Q+K++ ++++ S T LD+ E GYK R+DG + RQ
Sbjct: 609 SGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQR 668
Query: 329 AIDRFNAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQAN 508
+D FN P FVF LS++AGG GINL A+ +I++D DWNP D QA +R R GQ
Sbjct: 669 LVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKK 728
Query: 509 KVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 604
+YRF+ ++EE++ Q K L+ VV
Sbjct: 729 DCFVYRFIATGTIEEKIFQRQSHKQSLSSCVV 760
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 128 bits (309), Expect = 9e-31
Identities = 64/144 (44%), Positives = 95/144 (65%)
Frame = +2
Query: 158 KLVLLSKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAID 337
K+ L K+L E G RV++FSQ T++LDIL+ ++ K+ R DG RQ+ ID
Sbjct: 762 KVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLID 821
Query: 338 RFNAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVM 517
+F A + VF LST+AGG GINLA A+ VI+YD +NP +D+QA RAHR+GQ +V
Sbjct: 822 QFYADESIN-VFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVT 880
Query: 518 IYRFVTRNSVEERVTQVAKRKMML 589
+Y+FV ++++EE + ++A K+ L
Sbjct: 881 VYKFVVKDTIEEHIQRLANAKIAL 904
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 124 bits (298), Expect = 2e-29
Identities = 68/153 (44%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Frame = +2
Query: 206 HRVLIFSQMTKMLDILE-DFLEGE--GYKYERIDGGITGTIRQEAIDRFNAPGAQQFVFR 376
HRVLIF Q+ MLD++E D L+ Y R+DG + T RQEA+ +FN + V
Sbjct: 1737 HRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSID-VLL 1795
Query: 377 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEER 556
L+T GGLG+NL ADTVI + DWNP D+QA RAHRIGQ V +YR +TR +EE+
Sbjct: 1796 LTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEK 1855
Query: 557 VTQVAKRKMMLTHLVVRPGMGGKGATFTKQELD 655
+ + + KM + VV G + T Q LD
Sbjct: 1856 IMGLQRFKMNVASTVVNQQNAGLSSIGTDQILD 1888
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 120 bits (289), Expect = 3e-28
Identities = 62/146 (42%), Positives = 92/146 (63%)
Frame = +2
Query: 152 SGKLVLLSKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEA 331
S K+ L +LK+ + R+LIFSQ T++LDILE L ++ R+DG RQ+
Sbjct: 764 SAKVKKLCSLLKKSRPN-ERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQL 822
Query: 332 IDRFNAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANK 511
ID F+ VF LST++GG GINL A+ VI++D +NP +D+QA RAHR+GQ
Sbjct: 823 IDDFHT-NENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRP 881
Query: 512 VMIYRFVTRNSVEERVTQVAKRKMML 589
V +YR +T+N++EE + ++A K+ L
Sbjct: 882 VHVYRLITKNTIEENIRRLANTKLTL 907
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 103 bits (246), Expect = 4e-23
Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Frame = +2
Query: 164 VLLSKMLKQLKEQGH-----RVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQE 328
V L+ +L QL++ H +V+IFSQ T LDI+ D LE E Y R DG ++ +R
Sbjct: 963 VKLNGLLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRST 1022
Query: 329 AIDRF-NAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQA 505
A++ F N P + +S +AGG+G+NL A+ V I D W+ + QA R HR+GQ
Sbjct: 1023 ALETFRNDPDVNVLI--ISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQE 1080
Query: 506 NKVMIYRFVTRNSVEERVTQVAKRKMMLT 592
V + R++ R++VEER+ ++ +RK +T
Sbjct: 1081 KPVFVTRYIVRDTVEERMLKIQERKNFIT 1109
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 99.1 bits (236), Expect = 7e-22
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 4/221 (1%)
Frame = +2
Query: 32 LNVMMDLKKCCNHPYLFPVAAEE---APLGPHGNYDTQALIKASGKLVLLSKMLKQLKEQ 202
L ++ L K CN L E L ++ + ++ +S KL +L+ +LK +
Sbjct: 488 LKILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRG 547
Query: 203 GHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNAPGAQQF-VFRL 379
+ +I SQ + L+++E FL ++ ++ G + R + FN ++F V L
Sbjct: 548 CQKAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLL 607
Query: 380 STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERV 559
S++AGG G+NL + +IIY+ WNP D+QA SR +R GQ V IY F++ ++ER+
Sbjct: 608 SSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERI 667
Query: 560 TQVAKRKMMLTHLVVRPGMGGKGATFTKQELDDILRFGTEE 682
K L+ + K FT +++ + + E
Sbjct: 668 FIRQNTKQGLSSSFIDSDASQKKNFFTGEDIKTLFSYSKTE 708
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 97.1 bits (231), Expect = 3e-21
Identities = 63/165 (38%), Positives = 87/165 (52%), Gaps = 1/165 (0%)
Frame = +2
Query: 194 KEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNA-PGAQQFV 370
K+ ++LIFSQ L++ EG KY GG++ R +A+ F P + V
Sbjct: 880 KQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVR--V 937
Query: 371 FRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVE 550
+S +AG +G+NL A+ VII D WNP+ + QA RAHRIGQ V I R VT N++E
Sbjct: 938 LLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIE 997
Query: 551 ERVTQVAKRKMMLTHLVVRPGMGGKGATFTKQELDDILRFGTEEL 685
ERV + RK L + +G KG L +I R T+EL
Sbjct: 998 ERVLALQDRKREL----IDSALGEKG-------LREISRLNTKEL 1031
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 830
Score = 95.9 bits (228), Expect = 6e-21
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Frame = +2
Query: 209 RVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNAPGAQQFVFRLSTR 388
+ +IFSQ T LDI++ L G + R DG + R++++D + Q V S +
Sbjct: 672 KTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQ-VLLCSLK 730
Query: 389 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQV 568
G LG+NL A VI+ D WNP + QA R HRIGQ V++Y+ V N++EE++ ++
Sbjct: 731 CGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVEL 790
Query: 569 AKRKMMLTHLVVRPGMG-GKGATFTKQEL 652
K L + +G GK + FT ++L
Sbjct: 791 QNLKRDL----AKQALGDGKKSVFTSKKL 815
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 95.1 bits (226), Expect = 1e-20
Identities = 50/171 (29%), Positives = 94/171 (54%), Gaps = 2/171 (1%)
Frame = +2
Query: 146 KASGKLVLLSKMLKQL--KEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTI 319
K+S KL + + + ++ ++L++SQ ++ L ++ L+ E ++ R DG ++
Sbjct: 720 KSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQ 779
Query: 320 RQEAIDRFNAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 499
RQ+++ FN V +S +AG +G+NL A+ VI+ + +NP + QA R HR+G
Sbjct: 780 RQKSLHSFNND-KDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLG 838
Query: 500 QANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGATFTKQEL 652
Q V +YRF+T++++EER+ V ++K L + + K+EL
Sbjct: 839 QQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNENNPLSRLDKEEL 889
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 86.2 bits (204), Expect = 5e-18
Identities = 43/141 (30%), Positives = 74/141 (52%)
Frame = +2
Query: 182 LKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNAPGAQ 361
L + K++ + ++FSQ T MLD++ L G+ ++DGG+T R I+ F+
Sbjct: 803 LLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSND-IN 861
Query: 362 QFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRN 541
+F +S +AGG+ +NL A V + D WN QA R HRIGQ + + N
Sbjct: 862 ITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIEN 921
Query: 542 SVEERVTQVAKRKMMLTHLVV 604
S+E ++ ++ ++K + H +
Sbjct: 922 SIESKIIELQEKKAQMIHATI 942
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 64.1 bits (149), Expect = 2e-11
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Frame = +2
Query: 158 KLVLLSKMLKQLK--EQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEA 331
K+ +SK L LK E +V++FSQ +LD+L E G + R DG T
Sbjct: 1187 KIDTISKHLLYLKHNELYPKVVVFSQWLDVLDVLHKSFEANGIVFIRFDGKSKNT----C 1242
Query: 332 IDRFNAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANK 511
+ RF + Q V L R+ G+ L A V + + N ++QA SR HRIGQ
Sbjct: 1243 LKRFKEERSLQ-VLTLHARSQSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRP 1301
Query: 512 VMIYRFVTRNSVEERVTQVAKRK 580
+Y ++ ++VE + ++ K
Sbjct: 1302 TFVYYYIVEDTVEGHILNLSLTK 1324
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.5 bits (83), Expect = 0.002
Identities = 33/134 (24%), Positives = 57/134 (42%)
Frame = +2
Query: 143 IKASGKLVLLSKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIR 322
++ S K L +L L +G LIF + +M D L D+L + I G T R
Sbjct: 411 VEDSEKRSYLLDILHTLPPEG-LTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRER 469
Query: 323 QEAIDRFNAPGAQQFVFRLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 502
+ A++ F + G + ++T G+++ VI YD + + + R R G
Sbjct: 470 ERALELFRS-GRTSIM--VATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGN 526
Query: 503 ANKVMIYRFVTRNS 544
+ + F RN+
Sbjct: 527 TGQAV--AFFNRNN 538
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 30.7 bits (66), Expect = 0.26
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -2
Query: 346 IKPIYGFLTDRSRDTTVNSFILISLTLQEVLKYIQHFRHL*ENQYPMTL 200
+ P G +T D+ V+ F L + L EVLK +H RH QY + L
Sbjct: 269 VAPKSGAITAGQVDSFVSHFPLCAKHLHEVLKRDKHLRHFGRLQYGLFL 317
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 29.5 bits (63), Expect = 0.61
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 404 INLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYR 526
+NL T + D+DWNP +D Q + G +K+MI++
Sbjct: 74 VNLFRGHTAAVLDTDWNPFHD-QVLASG---GDDSKIMIWK 110
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = -1
Query: 386 LSTSGTQTVGLPGH*TYLWLLDGSFP*YHRQFFHTYIPHPPRSPQVYPTFSSSVRKSVPY 207
L++S QT+G P +W +FP +++ FH Y P P ++ P+ +S++ V +
Sbjct: 223 LTSSIIQTLGTPN--PSMWPELSTFPDWNKFIFHEYPPKP--WSEILPSVDTSIQYIVSH 278
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 28.3 bits (60), Expect = 1.4
Identities = 30/126 (23%), Positives = 47/126 (37%)
Frame = +2
Query: 209 RVLIFSQMTKMLDILEDFLEGEGYKYERIDGGITGTIRQEAIDRFNAPGAQQFVFRLSTR 388
R L+F + D L L GY I GG R I + A G F ++T
Sbjct: 670 RTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKA-GV--FDVLIATS 726
Query: 389 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQV 568
G+++ + V+ YD + + + R R G + F+T E+ +
Sbjct: 727 VVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTG--VAVTFITPEQ-EKYAVDI 783
Query: 569 AKRKMM 586
AK M
Sbjct: 784 AKALKM 789
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 11 GGQTVSLLNVMMDLKKCCNHPYLFPVAAEEAPLGP--HGNYDTQALIKASGKLVL 169
G + L+ M L++ N P++ P+A++ LG G + ++ K S LV+
Sbjct: 448 GPSLLEYLDSMTHLERKVNAPFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVM 502
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 255 RTSWRVRDISMKELTVVSRERSVKKP*IGLMPREPNSLC 371
R +R RD+ ++ + + E+ +K G+ EPN C
Sbjct: 121 RFRFRHRDLKLENILIKVNEQQIKIADFGMATVEPNDSC 159
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 290 FHTYIPHPPRSPQVYPTFSSSVRKSVPYDP 201
F + PHP S + T+S + K+VP P
Sbjct: 612 FESKSPHPNYSRTPHETYSKASSKNVPLSP 641
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 401 GINLATADTVIIYDSDWNPH 460
G+ AT D VII D+D++ H
Sbjct: 82 GLKFATGDFVIIMDADFSHH 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,376
Number of Sequences: 5004
Number of extensions: 58831
Number of successful extensions: 206
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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