Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_D02
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0658 - 20366559-20367562,20367745-20367937                       30   2.3  
06_03_0435 - 20742551-20743351                                         29   4.1  
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689...    29   4.1  
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073...    28   7.1  
08_02_1230 + 25419533-25420446,25421098-25421279,25422197-254225...    28   9.4  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    28   9.4  

>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -2

Query: 344 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 165
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL   V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310

Query: 164 QGG 156
             G
Sbjct: 311 HPG 313


>06_03_0435 - 20742551-20743351
          Length = 266

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 463 EGYXRAAATCSSSTWCHCAGGRRAAPALKLR----AFPIRNERQSSSALG 326
           +G    AAT S + W    GGR  AP  +LR     FPIR++    +  G
Sbjct: 173 DGGAAVAATPSPALWRTSFGGRSPAPVRQLRITDSPFPIRDDGGEDAGAG 222


>01_01_0878 +
           6888459-6889227,6890498-6890523,6891679-6891843,
           6892415-6892494,6893001-6893154,6893808-6893864,
           6894103-6894170,6894238-6894344,6894475-6894542,
           6894885-6895007
          Length = 538

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -3

Query: 445 AATCSSSTWCHCAGGRRAAPALKLRAFPIRNERQSSSALGTE 320
           A+TCSSS+     G   AA    L AF       SSSA G E
Sbjct: 70  ASTCSSSSSAFNPGSSGAASTSSLSAFSSSASTASSSAAGDE 111


>10_08_1040 +
           22503641-22503681,22503838-22504299,22506952-22507361,
           22507484-22507640,22507718-22507937,22508053-22508106,
           22508193-22508272,22508359-22508636,22509193-22509515,
           22509590-22509853,22510453-22510860
          Length = 898

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 278 RRTGRSHAGGESYAFGAESRRRLALISDRECPQLQGRRCSP 400
           RRT R   GG+     A  RRR    ++    Q++GR C P
Sbjct: 147 RRTARQRPGGDGGGAAAWGRRRWR--AETPMQQVEGRNCLP 185


>08_02_1230 +
           25419533-25420446,25421098-25421279,25422197-25422543,
           25423327-25423557,25423680-25423775,25423934-25424044
          Length = 626

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 324 VPRADDDWRSFLIGNARSFRAGAARLPP 407
           V  +DD+   FL+G AR   A AA  PP
Sbjct: 92  VSSSDDEEEDFLVGPARGSSAAAAVAPP 119


>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
            8812361-8812492,8812681-8812864,8813002-8813135,
            8813552-8813656,8813738-8813839,8813930-8814022,
            8814136-8814456,8814595-8814696,8814791-8814853,
            8815213-8815708,8815964-8816124,8816213-8816743,
            8817077-8817118,8817203-8817334,8817639-8817703,
            8817858-8818169,8818262-8818334,8818425-8818517,
            8819440-8819501,8819740-8819809
          Length = 1777

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 361  SGMPAASGQALLAYRQHNGTMCSSCRSRPLXSIP 462
            S +PA    A+  +R+H G + S     P+ SIP
Sbjct: 1546 STVPAFGSMAIPGFREHGGLLPSPANVPPMLSIP 1579


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,969,113
Number of Sequences: 37544
Number of extensions: 324757
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)