Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_D02
         (768 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro...    31   3.4  
BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein.     31   3.4  
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.     31   3.4  

>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like protein
            rA9 protein.
          Length = 1649

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 278  RRTGRSHAG--GESYAFGAESRRRLALISDRECPQLQGRRCSPTASTMAPCARAAGRGRS 451
            RRT RS +G  G S     ESR++      R   + +GR CSPT+S    C     R RS
Sbjct: 1086 RRTSRSRSGSPGSSSYEHYESRKKK---KRRSASRPRGRECSPTSSLERLCRHKHQRERS 1142


>BC029651-1|AAH29651.1| 1080|Homo sapiens KIAA1542 protein protein.
          Length = 1080

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 278 RRTGRSHAG--GESYAFGAESRRRLALISDRECPQLQGRRCSPTASTMAPCARAAGRGRS 451
           RRT RS +G  G S     ESR++      R   + +GR CSPT+S    C     R RS
Sbjct: 517 RRTSRSRSGSPGSSSYEHYESRKKK---KRRSASRPRGRECSPTSSLERLCRHKHQRERS 573


>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
          Length = 1654

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 278  RRTGRSHAG--GESYAFGAESRRRLALISDRECPQLQGRRCSPTASTMAPCARAAGRGRS 451
            RRT RS +G  G S     ESR++      R   + +GR CSPT+S    C     R RS
Sbjct: 1091 RRTSRSRSGSPGSSSYEHYESRKKK---KRRSASRPRGRECSPTSSLERLCRHKHQRERS 1147


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,695,269
Number of Sequences: 237096
Number of extensions: 1543876
Number of successful extensions: 3541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3541
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)