Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_D02
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.77 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.1  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   5.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   5.5  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   7.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
          isoform protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 11 ARVGILEHCVISIVAGADSLSLI 79
          A VG++   + S+VAGA SL+L+
Sbjct: 11 AGVGVVGGTIASVVAGAASLTLV 33


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 423 VLELQVAAALXYPSRGPXLTRTXLSCTXWSP 515
           ++E+   +A+  PS+ P +    +SC   SP
Sbjct: 364 MIEVIPLSAIPEPSKNPAMGHWQMSCVACSP 394


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 90  VHQLISDKESAPATMDITQCSRIPT 16
           +HQ IS K+ +PAT   ++CS I T
Sbjct: 266 MHQ-ISKKKLSPATPKGSKCSMITT 289


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 37  CDIHCCWRGF 66
           CD+ CC RG+
Sbjct: 113 CDLMCCGRGY 122


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 37  CDIHCCWRGF 66
           CD+ CC RG+
Sbjct: 114 CDLMCCGRGY 123


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 43  IHCCWRGFFITDKLVDILCLSVIKCQ 120
           +HC  R  F++D+++      V  CQ
Sbjct: 20  VHCGTRPSFVSDEMIATAASVVNACQ 45


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 266 LVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQVQ 162
           LV +      +LN  P R  AC ++V A  +   Q
Sbjct: 301 LVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQ 335


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 266 LVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQVQ 162
           LV +      +LN  P R  AC ++V A  +   Q
Sbjct: 301 LVDDCGCNSTMLNENPARVMACMRSVDAKTISVQQ 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,207
Number of Sequences: 438
Number of extensions: 2841
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)