Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_C24
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 29 0.58
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 2.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 3.1
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 26 5.5
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 26 5.5
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 26 5.5
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 26 7.2
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 25 9.5
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 9.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.5
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 381 LIYALQNHSLQ--I*LICFQEINPTLYDSTLPQLPHCKSTMIYRLEVK 244
+++A Q S++ + L CF + L P LP ST++YRL K
Sbjct: 780 VLFAFQEQSVEEKVILTCFSTVVNALGTRCKPYLPQIVSTILYRLNNK 827
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 465 GDVVGLCAAIEAL-GEASPEQISRTSTD 545
GD +G+C A+E L A+PEQ+ S D
Sbjct: 1959 GDRIGVCIALEELINSATPEQLEIYSDD 1986
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 318 PTLYDSTLPQLPHCKSTMIYRLEVKE-P-DRYLGLSIHQNLLGISEDIPKYG 169
PT+ S L Q P+C S +I R+E KE P RY L + LG +PK G
Sbjct: 1162 PTM--SPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAE--LGELVGVPKEG 1209
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 153 LFLITHRTLEYLQKYPIDFDVSKGRGTGQVPLPPICKSLW 272
L L++H T+E Q + D + + VP PP+ K +W
Sbjct: 98 LVLLSHFTVELPQIWLFDPMCATFGLSTSVPFPPVTKMIW 137
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 228 GTGQVPLPPICKSLWTCSVEAAVEYCRIVWDLF 326
G G +P P+ + L T S++A E R DL+
Sbjct: 234 GVGLIPWSPLARGLLTRSIDANEETIRSKTDLY 266
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 55 RCKHCCGLCIIIQKSFLRIHNE 120
RCK C G +I Q+ L +H E
Sbjct: 194 RCKECDGAKVISQRKILTVHVE 215
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 249 PPICKSLWTC-SVEAAVEYCRIVWDLFPESKL-VKFVVSDSVAHILNTWAALQQNLT 413
P + + TC S E A + CR + + FP+ K+ +++V+ D ++++ + AA+Q T
Sbjct: 36 PEVFTVILTCRSREKAEDACRRLKEFFPDRKIRLEYVLLD-LSNMASVEAAVQDIAT 91
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 457 VLEEMLSDSVQPLKHWVKHHQSRYHAHRLIDIFKIED 567
VL EML + + K W+ + HA+R++ IED
Sbjct: 94 VLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIED 130
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 454 VVLEEMLSDSVQPLKHWVKHHQSRY 528
+ L+E +D ++ +KHW + +RY
Sbjct: 63 ISLDEWSNDQIEKMKHWGNINANRY 87
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 9.5
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +2
Query: 407 FNSCPKWLVSCW 442
FN+C +W++ CW
Sbjct: 377 FNACMRWVLVCW 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,495
Number of Sequences: 5004
Number of extensions: 59019
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -