Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_C24
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464... 29 3.3
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 29 5.7
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 29 5.7
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 29 5.7
06_01_0651 + 4711369-4712431,4713069-4713763 29 5.7
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 29 5.7
02_04_0401 + 22614761-22614915,22615160-22615261,22616024-22616171 28 7.6
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 28 10.0
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 28 10.0
>07_03_0262 +
15944259-15944514,15945524-15945597,15946320-15946400,
15946621-15946713,15946946-15947014,15947578-15947697,
15948342-15948413,15948624-15948701,15949463-15949654
Length = 344
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/14 (71%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Frame = +2
Query: 440 WTSTSW-CWRRCCR 478
W STSW CWR+ CR
Sbjct: 54 WWSTSWSCWRKACR 67
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 101 FYAFIMNSLFPVNHKTIFVLDHTPYFGISSEIPNRF 208
+ F N+ P NH T F L+ TP+ + S NRF
Sbjct: 129 YICFSSNTTIPENHTTGFTLEGTPF--VPSTTRNRF 162
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +3
Query: 348 FVVSDSVAHILNTWAALQQNLTHVLNGLCLVGPVRRGAGG 467
F+ D H + W T + LCL+ P G GG
Sbjct: 798 FIEVDGEMHSFHAWDHSHPRATEIFAMLCLLSPTPTGVGG 837
>07_03_0909 +
22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 459 AGGDVVGLCAAIEALGEASPEQISRTSTDRHFQNRGRIICITSARDDDSIRSL 617
+GG VV C+ + ++P Q+S T +D F + ++ +R+L
Sbjct: 542 SGGRVVEYCSKVNLFRMSAPVQVSETGSDHTFPTSCPWMTAVQCHENGMVRTL 594
>06_01_0651 + 4711369-4712431,4713069-4713763
Length = 585
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +3
Query: 360 DSVAHILNTWAALQQNLTHVLNGLCLVGPVRRGAGGDVVGLCAAI 494
D A A+L HV N L LV RRG GG AA+
Sbjct: 192 DGAAPSSGLLASLDDAYAHVTNSLSLVAG-RRGGGGSAASFAAAV 235
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 318 PTLYDSTLPQLPHCKSTMIYRLEVKEPDRYL 226
PT ++ LPQLP C IYR + P ++L
Sbjct: 66 PTQHNVNLPQLPECLQVSIYRFAML-PKKHL 95
>02_04_0401 + 22614761-22614915,22615160-22615261,22616024-22616171
Length = 134
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 189 QKYPIDFDVSKGRGTGQVPLPPIC---KSLWTCSVEAAVEYCRIVWDLFPESKLVKFVVS 359
Q YP+ ++ G GQ P P I LW CS+E E R V +F + F V+
Sbjct: 57 QLYPLPL-MNSVSGDGQWPWPLIGGDGPGLWLCSMECVEEVAR-VCVVFKDYVSAAFNVT 114
Query: 360 DSVAHILNTW 389
V + ++ W
Sbjct: 115 SLVNNHIDIW 124
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 402 QNLTHVLNGLCLVGPVRRGAGGDVVGLCAAIEALGEA 512
+++ H+LNG ++G + G+G + L AIE L A
Sbjct: 125 RSIPHLLNGKDVMGAAKTGSGKTLAFLIPAIEMLHHA 161
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 275 LQCGSCGRVLSYS 313
LQCGSC +LSYS
Sbjct: 897 LQCGSCSEILSYS 909
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,399,314
Number of Sequences: 37544
Number of extensions: 355388
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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