Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_C24
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-2|AAB94145.1|  782|Caenorhabditis elegans Hypothetical ...    42   4e-04
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.      29   5.1  
AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like ...    29   5.1  

>AF038615-2|AAB94145.1|  782|Caenorhabditis elegans Hypothetical
           protein R02D3.4 protein.
          Length = 782

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
 Frame = +3

Query: 153 LFLITHRTLEYLQKYPIDFDVSKGRGTGQVPLPPICKSLWTCSVEAAVEYCRIVWDLFPE 332
           +FL+  R+ ++++     FDV+   G  Q  L    K++WT  +E   E  RI+ D++P 
Sbjct: 9   VFLLD-RSAKFVENCNETFDVTIREGPKQKKLQ-FEKTIWTWCLEGIFEMHRILSDVYPR 66

Query: 333 SKL-VKFVVSDSVAHILNT-WAALQQNLTHVLNGLCLVGPVRRG--AGGDVV---GLCAA 491
             L ++F ++D +  +L+T W      LT    G  L+  V R   A  D+    GL  A
Sbjct: 67  GTLQLRFALADFMGKMLDTQWT--DGFLTREELGE-LIETVSRPSEANTDITPIGGLTMA 123

Query: 492 IEALGEASPEQISRTSTDRHFQNR 563
           IEAL   SPEQ +     R+  N+
Sbjct: 124 IEALAVQSPEQRNYNYDVRYSANK 147


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 130 EKGIHYECVKKIFG*LCITHNNVYILNSQFCVQY 29
           ++G+ Y+C+  IF  +  +HN  Y++ + +   Y
Sbjct: 118 QRGVIYKCIDHIFEHMAASHNQEYLVRASYLEIY 151


>Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical
           protein F20C5.2a protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 130 EKGIHYECVKKIFG*LCITHNNVYILNSQFCVQY 29
           ++G+ Y+C+  IF  +  +HN  Y++ + +   Y
Sbjct: 118 QRGVIYKCIDHIFEHMAASHNQEYLVRASYLEIY 151


>AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 130 EKGIHYECVKKIFG*LCITHNNVYILNSQFCVQY 29
           ++G+ Y+C+  IF  +  +HN  Y++ + +   Y
Sbjct: 118 QRGVIYKCIDHIFEHMAASHNQEYLVRASYLEIY 151


>AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like
           protein (klp-11) protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 130 EKGIHYECVKKIFG*LCITHNNVYILNSQFCVQY 29
           ++G+ Y+C+  IF  +  +HN  Y++ + +   Y
Sbjct: 81  QRGVIYKCIDHIFEHMAASHNQEYLVRASYLEIY 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,634
Number of Sequences: 27780
Number of extensions: 337677
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)