Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_C23
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    28   1.9  
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    27   2.5  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    27   2.5  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    27   4.4  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    27   4.4  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   7.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   7.6  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    26   7.6  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -3

Query: 369 GDAVRPTRLMDVQESELPPDCTLCEADIRQGAITPGDVRWCGTPVVHSRVRGEEFDQKVS 190
           G  +  ++  D  ES +  +       ++ G I    + WC TP++ S   G  +D K S
Sbjct: 210 GKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQS---GGSYDLKPS 266

Query: 189 LL 184
            +
Sbjct: 267 AI 268


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 394 PELTPALTRLYRLSYCTNRVPSSWKTAHVHPIPKKGDRSDP 516
           PE+  ++ R+++ +    +VP  W+   V+PI K G  + P
Sbjct: 58  PEIAQSVERIFKAA----KVPIEWERVKVYPILKNGTTTIP 94


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 400 LTPALTRLYRLSYCTNRVPSSWKTA-HVHPIPKKGDRSDPSSYRPIAIT 543
           L  +LTR+  L +  +   +  K   +V   PKKG   DPS+  P  +T
Sbjct: 14  LRVSLTRVAHLVFANSHESNDLKMVENVSSTPKKGVLEDPSTLTPEVVT 62


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 234 VHSRVRG-EEFDQKVSLLFRAVGQTVIGLAQWWETRPAK 121
           + S+V G +EF++K++     VGQ ++ L  W E  P +
Sbjct: 57  IQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKR 95


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 612 QLISDRQYGFRHGR----SAGDLLVYLTHRWAEALESKG 716
           QL  D +Y +R G     S  DL+ YLT RW E     G
Sbjct: 35  QLNEDGEYIYRTGDLVLGSVDDLISYLTPRWRERFVING 73


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 534 RDNFLGFPRVMERIINTQLLKYLEDRQLISDRQY 635
           RDN+    ++ + +   +L  Y++  Q++ DRQY
Sbjct: 240 RDNYDQLVKIAKVLGTDELFAYVQKYQIVLDRQY 273


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 376 VLKTCAPELTPALTRLYRLSYCTNRVPSSWKTAHVHPIPKKGDRSDPSSYRPI 534
           VLK  + +++PA T  YR +  +++VP   K   +    K+G  S  S Y  +
Sbjct: 256 VLKKPSRKMSPAYTSSYRQNSPSSQVPPVSKKHVIIYENKEGSSSSESVYEDV 308


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 285 GYLLHTVCSQAGAPTPGRP*VEWAGRHPRSGFENVRP*ADTC 410
           G  LHTVC +A  P  G     W G+        +    DTC
Sbjct: 93  GSHLHTVCEEAKCPNIGEC---WGGKDKSRATATIMLMGDTC 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,621,627
Number of Sequences: 5004
Number of extensions: 79031
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)