Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_C23
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 34 0.12
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 32 0.49
05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212... 31 1.5
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 30 2.0
11_06_0329 - 22398829-22399236 30 2.6
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 30 2.6
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 30 2.6
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572... 29 3.5
12_02_0783 + 23125786-23126037,23126867-23127784 29 4.6
01_06_0324 - 28485196-28486098 29 4.6
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676... 29 6.1
07_01_0721 - 5517503-5517709,5517761-5517883,5518385-5518627 29 6.1
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 29 6.1
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 29 6.1
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 343 KSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCTNRVPSSWKTAHVHPIPKKGDRSDPSS 522
KS GPDG PA + L + R + + +P + IPKK D
Sbjct: 907 KSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKD 966
Query: 523 YRPIAITSLAFQ 558
YRPI++ ++ ++
Sbjct: 967 YRPISLCNVVYK 978
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = +1
Query: 286 DICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCTNRVPSSW 465
D +TQ V ++++ K+ PDGI LK C P ++ L +
Sbjct: 220 DSFYTQ-EVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTDLQPI 278
Query: 466 KTAHVHPIPKKGDRSDPSSYRPIAITSLAFQ 558
+ + +PKK + YRPI++ ++ +
Sbjct: 279 NKSFITLVPKKSSPETVNDYRPISLMGISLK 309
>05_01_0274 -
2119122-2119775,2121457-2121570,2121895-2122203,
2123743-2123904,2124046-2124129,2124315-2124500
Length = 502
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 242 PPSSTVEFEAKSLTRRSAFSFALWARLSSDLRSGG 138
PPSS VE ++TR F+ A+ A LSS + GG
Sbjct: 423 PPSSVVETMTAAITRDPNFTTAVAAALSSIMAGGG 457
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/79 (20%), Positives = 34/79 (43%)
Frame = +1
Query: 322 LRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCTNRVPSSWKTAHVHPIPKKG 501
+ ++ K+ GPDG +K C + RL + N ++ + +PKK
Sbjct: 321 MSIIPADKAPGPDGFNGFFMKKCWHIIAQDYYRLVAHFHAGNVDLEILNSSFITLVPKKT 380
Query: 502 DRSDPSSYRPIAITSLAFQ 558
+ +RPI++ ++ +
Sbjct: 381 SLETVNDFRPISLMGISLK 399
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 612 QLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGE-ALL*A*YREGFDRVWHRALXS 782
+L+SD YGF G++ D + + +SK E LL + + FD + H A+ S
Sbjct: 415 KLVSDNHYGFIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILS 472
>11_06_0329 - 22398829-22399236
Length = 135
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +3
Query: 489 PQEG*PVGPIELQAYRDNFLGFPRVMERIINTQLLKYLEDRQLISDRQYGFRHGRSAGDL 668
PQ+ V P+ Q Y D+ L F RV + + LK+L Q + H DL
Sbjct: 27 PQKPAAVAPLLAQGYVDSILAFERVQWPVFSDDDLKHLSPEQRREIDKMAALHKALDDDL 86
Query: 669 LVY 677
V+
Sbjct: 87 AVF 89
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -1
Query: 347 DLWTXXXXXXRLTAHCVKQISGRELSHRGMFGGVAPPSSTVEFEAKS 207
DL T LT C+ +I G LSH+ + PSS V F S
Sbjct: 362 DLETVCVKDRLLTNECIDKIVGFALSHQLKHSTIPDPSSDVRFTLSS 408
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 309 CTLCEADIRQGAITPGDVRWCGTPVVHSRVRGEEFDQKVSLLFRAVGQ 166
C C ++RQG +T G V C T V + G+E Q+ S AVGQ
Sbjct: 255 CLSCCQELRQG-LTTGTVVTCDTAVDVPEIEGKEGLQEGSSHSSAVGQ 301
>07_01_0747 -
5724586-5724648,5725229-5725309,5725564-5725656,
5725775-5725929,5726023-5726131,5726291-5726481,
5727463-5727614,5728453-5728728,5729415-5729587,
5730023-5730298,5730839-5730958,5731051-5731176,
5731629-5731970
Length = 718
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 83 VLFGRSPKLQKETFAGLVSHHCASPMTVWPTARKRRLTFWSNSSPRTRLWTTGVPH-HRT 259
V FG QKE F ++ H A V+P +R F + R+ LW G+ + H T
Sbjct: 534 VHFGEPTPRQKECFTRVLQGHIALDQAVFP---ERTPGFVLDVLARSSLWKIGLDYRHGT 590
Query: 260 SPGVIAPCRI 289
GV A +
Sbjct: 591 GHGVGAALNV 600
>12_02_0783 + 23125786-23126037,23126867-23127784
Length = 389
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 434 LIALTG--FRLHGRPP-TSTLSPRRVTGRTHR 520
L+A TG +RL G PP T T PRR TG R
Sbjct: 158 LLAATGQSWRLRGSPPPTPTPPPRRATGERRR 189
>01_06_0324 - 28485196-28486098
Length = 300
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 369 GDAVRPTRLMDVQESELPPDCTLCEADIRQGAITPGDVRWCGTPVVHSRVR 217
G +R L+ V +S PP+CT CE + + D + G ++ RVR
Sbjct: 221 GQVLRQGFLLSVNDSRRPPNCTQCEESKGRCGFSQ-DGEFIGCLCLNGRVR 270
>07_03_1187 +
24667044-24667091,24667196-24667274,24667520-24667695,
24668216-24668766,24669080-24669941
Length = 571
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +2
Query: 143 HCASPMTVWPTAR-------KRRLTFWSNSSPRTRLWTTGVPHHRTSPGVI 274
HC VWP+ R K +W N S R +L HH++ G +
Sbjct: 54 HCGVYADVWPSVRMMDQAMVKNHRVYWKNRSHRLKLNNLAGEHHQSFWGTV 104
>07_01_0721 - 5517503-5517709,5517761-5517883,5518385-5518627
Length = 190
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 255 RWCGTPVVHSRVRGEEFDQKVSLLFRAVGQTVIGLA 148
+W GT VVH V G+E + S LF T++G A
Sbjct: 116 QWRGTGVVHVGVGGKEDYGRKSSLFGPTTMTLVGTA 151
>06_01_1159 -
9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 118 NFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGAT 249
N C P +RK D S+AHS +++ A+ T+ D +T
Sbjct: 123 NKCLFGNPNMRKEDGSVAHSMFHRSEKRKSTLAACGTITDEAST 166
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 369 GDAVRPTRLMDVQESELPPDCTLCE 295
G +R L+ V +S PP+CT CE
Sbjct: 218 GQVLRQGFLLSVNDSRRPPNCTQCE 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,970,744
Number of Sequences: 37544
Number of extensions: 672020
Number of successful extensions: 1943
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1941
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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