Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_C21
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    29   1.1  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   1.1  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   2.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.5  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    27   4.5  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   6.0  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.9  

>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 538 PPLRSRLHQPDHQIPEFHTPTTPELNIHFHQSPDA 642
           PP+   L  PD Q  +F T   PEL I F  +PD+
Sbjct: 92  PPMAKLLSDPDFQGKQFPTVEAPELFI-FELAPDS 125


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTG 448
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLNHQM- 366

Query: 449 DVTVEGVNVLATPSSS 496
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 602 PQNLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 721
           P N  + S+NP TP     +P + PP+S+ +P     P S
Sbjct: 264 PLNYQNSSLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMS 303


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 260  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 341 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 759 ENKGGETPLAMPSDEGVRYADGASDDN 679
           +NK GE P    S E    A G+SD+N
Sbjct: 139 KNKNGEEPETSTSVENAESAKGSSDEN 165


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +1

Query: 469 QCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQ---IPEFHTPTTPELNIHFHQSP 636
           Q  G+ F   + YW   P     PP+ ++L+ P      I   H  T  +L  H   SP
Sbjct: 378 QVTGYQFDDENNYWMILPADHYDPPIEAKLNVPVKNMDYIKLHHVGTNTDLMTHDVASP 436


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 467 VNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPNSIHQ---PPQNLTSISINPL 637
           V  +++ SSS + +G +   H ++LP  +G     +   ++ H    PPQ  +  S  P 
Sbjct: 166 VATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPPQ--SGYSSMPS 223

Query: 638 TPY 646
            PY
Sbjct: 224 LPY 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,777
Number of Sequences: 5004
Number of extensions: 66589
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)