Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_C20
(917 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 32 2.5
Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine r... 31 5.9
X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine ... 31 5.9
U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine r... 31 5.9
BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor, n... 31 5.9
BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor, n... 31 5.9
BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor, n... 31 5.9
AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine ... 31 5.9
AJ295237-1|CAC16144.1| 450|Homo sapiens neuronal nicotinic acet... 31 7.7
AJ278118-1|CAC20435.1| 450|Homo sapiens neuronal nicotinic acet... 31 7.7
AF327367-1|AAK14333.1| 450|Homo sapiens nicotinic acetylcholine... 31 7.7
AF199235-1|AAG00795.2| 450|Homo sapiens nicotinic acetylcholine... 31 7.7
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 32.3 bits (70), Expect = 2.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 293 PRXRLWRPDVVLLNAAATTAGDYALRARVSNNGSVSW 403
P R+W PD+VL N T V +NGSV W
Sbjct: 106 PAKRIWLPDIVLYNNDGTYEVSVYTNLIVRSNGSVLW 142
>Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 31.1 bits (67), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 403
P LW PD+VL NA G + V +NG+V W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine
receptor beta-3 subunit protein.
Length = 423
Score = 31.1 bits (67), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 403
P LW PD+VL NA G + V +NG+V W
Sbjct: 71 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 108
>U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 31.1 bits (67), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 403
P LW PD+VL NA G + V +NG+V W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 31.1 bits (67), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 403
P LW PD+VL NA G + V +NG+V W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 31.1 bits (67), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 403
P LW PD+VL NA G + V +NG+V W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 31.1 bits (67), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 403
P LW PD+VL NA G + V +NG+V W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine
receptor beta-3 subunit precursor protein.
Length = 458
Score = 31.1 bits (67), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 403
P LW PD+VL NA G + V +NG+V W
Sbjct: 106 PSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>AJ295237-1|CAC16144.1| 450|Homo sapiens neuronal nicotinic
acetylcholine receptor subunit4 protein.
Length = 450
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 403
P +WRPD+VL N A A G + + ++G+V W
Sbjct: 107 PSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRW 144
>AJ278118-1|CAC20435.1| 450|Homo sapiens neuronal nicotinic
acetylcholine alpha10 subunit protein.
Length = 450
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 403
P +WRPD+VL N A A G + + ++G+V W
Sbjct: 107 PSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRW 144
>AF327367-1|AAK14333.1| 450|Homo sapiens nicotinic acetylcholine
receptor subunit alpha 10 protein.
Length = 450
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 403
P +WRPD+VL N A A G + + ++G+V W
Sbjct: 107 PSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRW 144
>AF199235-1|AAG00795.2| 450|Homo sapiens nicotinic acetylcholine
receptor subunit alpha 10 protein.
Length = 450
Score = 30.7 bits (66), Expect = 7.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 PRXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSW 403
P +WRPD+VL N A A G + + ++G+V W
Sbjct: 107 PSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRW 144
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,412,754
Number of Sequences: 237096
Number of extensions: 2199823
Number of successful extensions: 5847
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5810
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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