Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_C09
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...   318   4e-87
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical p...    28   7.4  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   9.8  

>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score =  318 bits (780), Expect = 4e-87
 Identities = 149/209 (71%), Positives = 172/209 (82%), Gaps = 1/209 (0%)
 Frame = +2

Query: 11  ENYIKGRKRAIWVSVSNDLKYDAERDLRDIGAGKIEVYPLNKFKYAKISSAVNGNVKKGV 190
           ENY++GRKRAIW+SVS+DLK+DAERDLRD GA  I VY LNK KYAKIS   NG++KKGV
Sbjct: 316 ENYLQGRKRAIWLSVSSDLKFDAERDLRDCGAPNIPVYALNKMKYAKISGKENGSIKKGV 375

Query: 191 VFATYSSLIGET-ASNNTKYRSRLKQLLQWCGEDFDGVIVFDECHKAKNLCPVGSGKATK 367
           +FATY+SLIGE   + + KYRSR+ QL+QW G+D+DGVI+ DECH+AKNL P    K TK
Sbjct: 376 MFATYTSLIGECRGAKSRKYRSRISQLIQWFGQDYDGVIILDECHRAKNLVPTAGAKPTK 435

Query: 368 TGLTALELQNKLPKARVVYASATGASEPRNMAYMVRLGIWGEGTPFPTFMDFINAVEKRG 547
           TG   LELQ  LP ARVVYASATGA+EPRNMAYM RLG+WGE   FP F DFI+AVE+RG
Sbjct: 436 TGRMVLELQKALPNARVVYASATGATEPRNMAYMTRLGLWGERQAFPEFHDFISAVERRG 495

Query: 548 VGAMEIVAMDMKLRGMYIARQLSFHGVSF 634
           VGAMEIVAMDMK RG+Y+ARQLSF GVSF
Sbjct: 496 VGAMEIVAMDMKQRGLYLARQLSFRGVSF 524



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 633 FRIEEVPLSDAFKETYDKSVALW 701
           F ++EV LS  F + YD +V LW
Sbjct: 524 FAVQEVQLSSEFVKMYDAAVKLW 546



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 775 WGQXWFXXQXFFKYL 819
           WGQ W   Q FFKYL
Sbjct: 572 WGQFWACHQRFFKYL 586


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
 Frame = -2

Query: 652 GTSSMRKGHSVEGQLARYVHPAQLHVH--RHYLHGAHASLLHGVNEVHKGREGRPLPPYP 479
           G   +  GH   G  A + H    H H   H  H  H    HG + VH G  G       
Sbjct: 607 GEHGVHHGHHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAH 666

Query: 478 EAHH 467
             HH
Sbjct: 667 HGHH 670


>Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical
           protein C16C10.12 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +2

Query: 155 SSAVNGNVKKGVVFATYSSLIGETASNNTKYRSRLKQLLQWCGEDFDGVIV 307
           S A+   V    +FA  S L G T  NN     R  Q   WC   F+G++V
Sbjct: 502 SLAIAFAVPASGLFALLSGLYGNT--NNFPVYIRWMQWTSWCRYGFEGLVV 550


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 307  IRRVSQGKEPLPRRLREGDED 369
            +R V Q  EPL RRL E D+D
Sbjct: 2509 VRHVEQNPEPLARRLFEEDDD 2529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,244,504
Number of Sequences: 27780
Number of extensions: 224372
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)