Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_C08
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.86 
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    28   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.5  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    27   4.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   8.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   8.0  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 215 VRVHRANTGKSSNELDRQTTELERR 289
           +R H+ + G++  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = -3

Query: 165 WSXGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTPV 1
           WS G     +   +ESI+   +       +L ++  R +   +N S  H + TP+
Sbjct: 242 WSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPI 296


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +3

Query: 696  PPPGQHAPGCXXPSXARGXPAPXLXXPAXPPXTXXTXXPXAS-GVP 830
            P P    P    PS A   P P +  P  PP +     P  S G+P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +3

Query: 696  PPPGQHAPGCXXPSXARGXPAPXLXXPAXP-PXTXXTXXP-XASGVP 830
            P P   AP    PS A   P P +  P  P P +     P  A+GVP
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 138 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 40
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
 Frame = +3

Query: 144 GTPPPXSKIVVNLTLHLRHANIRESESTVRIQANLQMNWIDKRLSW--NAGEWGC-STWL 314
           G P   SK V N+  HLR     +     R+  N+ +    K L    ++G+  C     
Sbjct: 95  GNPDFVSKSVENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTLKGFVDSGKISCVGLSE 154

Query: 315 VSSERLWRPDVVLLNAAATTAGDYALRAR-VSNNGSVSXXKAL 440
           VS+E + R   V+  AA     +Y+L +R +  NG +   + L
Sbjct: 155 VSAETIKRAHAVVPIAAVEV--EYSLFSRDIETNGIMDICRKL 195


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -3

Query: 201 HVSNAGSG*LRFWSXGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 34
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 33  ISRRH 19
             RRH
Sbjct: 490 GIRRH 494


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -3

Query: 201 HVSNAGSG*LRFWSXGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 34
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 33  ISRRH 19
             RRH
Sbjct: 490 GIRRH 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,426
Number of Sequences: 5004
Number of extensions: 49433
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)