Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_C08
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 31 1.2
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 30 2.8
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 29 3.7
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 29 6.4
04_03_0586 + 17572283-17572512,17572712-17572817 29 6.4
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63... 29 6.4
02_03_0251 + 16849905-16851308 29 6.4
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.5
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 317 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVRGGS 147
H P AAA P VP++ P L + S GG GL S S + G + D G+ GGS
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGI-GGS 62
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +3
Query: 699 PPGQHAPGCXXPSXARGXPAPXLXXPAXPPXTXXTXXPXA--SGVPXXLFXXXPP 857
PPG PG P AP P PP T SG P ++ PP
Sbjct: 138 PPGSMPPGSMPPGSMPMQMAPLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPP 192
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 221 VHRANTGKSSNELDRQTTELERRGVG 298
V+ A KSS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +3
Query: 642 VADXXSXDGKXXXSLXXXPPPGQHAPGCXXPSXARGXPAPXLXXP 776
VAD S GK + PP G H PG PS G P P + P
Sbjct: 991 VADKRSGRGKGHSFVPFGPPNGAHKPG-VHPS---GYPLPRMPFP 1031
>04_03_0586 + 17572283-17572512,17572712-17572817
Length = 111
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 698 PPXATRPWLPXXVXXPGGXGXSP 766
PP ATR WLP + P SP
Sbjct: 72 PPSATRDWLPAAMRGPNAIAVSP 94
>04_01_0065 -
636957-637082,637165-637251,637365-637625,637695-638100,
640036-640223
Length = 355
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -1
Query: 269 FVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPDRTLRGASRS*GTVMLRF 90
++ +H C+ G G+ N+S+ + D + G SPD L G + ++ R
Sbjct: 6 YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64
Query: 89 RILPH 75
I PH
Sbjct: 65 EIYPH 69
>02_03_0251 + 16849905-16851308
Length = 467
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 696 PPPGQHAPGCXXPSXARGXPAPXLXXPAXP 785
PPP HA G R PAP PA P
Sbjct: 3 PPPAAHAAGLRVLRTTRVAPAPPAGQPALP 32
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 399 GRGERSPRRWLQPRLAVPRQASTSVPRTP 313
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 396 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 274
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,205,355
Number of Sequences: 37544
Number of extensions: 469741
Number of successful extensions: 1551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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