Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_C06
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    86   7e-18
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    29   0.62 
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   2.5  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   3.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   4.4  
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    26   7.6  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 85.8 bits (203), Expect = 7e-18
 Identities = 40/81 (49%), Positives = 54/81 (66%)
 Frame = +3

Query: 594 WLHDQIDSGEQITEVQASDKLLEFRRDEKDFMGPSFGTIAGSGANGAIIHYSPDREGXQT 773
           WL + ++SG +I E  A+ KL +FRR    FMG SF TI+ +G NGA+IHYSP   G   
Sbjct: 328 WLDEYLNSGNKINEFDAATKLEQFRRKNNLFMGLSFETISSTGPNGAVIHYSPPATG-SA 386

Query: 774 VIERDPMFLLDSGGQYRDGTT 836
           +I+   ++L DSG QY+DGTT
Sbjct: 387 IIDPTKIYLCDSGAQYKDGTT 407



 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 46/143 (32%), Positives = 71/143 (49%)
 Frame = +1

Query: 133 LTALDDIAYTLNLRGSDIEYNPVFFSYLIVMETNVVLYWGDGQLPPSVTDHLREEGVDSV 312
           ++ LD++A+  NLRG+D+ YNPVFF+Y +V      LY  + ++ P V+ HL  +G   V
Sbjct: 195 VSMLDEVAWLYNLRGADVPYNPVFFAYSLVTLDEAFLYVDERKVTPEVSKHL--DGF--V 250

Query: 313 EGKPYGDILEGLKEMARELSESGDGRHVIWLSNDANEAIHRAASGSDVLKRPIDLISEVS 492
           +  PY  +    K     L+  G      W           A S  +    PI     +S
Sbjct: 251 KILPYDRVFSDAKN--SNLTRIGISSKTSWCI---------ATSFGETKVMPI-----LS 294

Query: 493 PVKLAKLVKNEIELQGFRNCHIK 561
           P+  AK +KN+ EL+G + CHI+
Sbjct: 295 PISQAKGIKNDAELKGMKECHIR 317



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 12  PKRSHNELAPLHVRYTGRTAGEKIAELRRKMAEKKASA 125
           PK    +L    ++Y G    EK+  LR  M E+K  A
Sbjct: 155 PKEPLEKLIVQEIKYAGLGVDEKLHNLREAMKEQKIEA 192


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 334  ILEGLKEMARELSESGDGRHVIWLSNDANEAIHRAASGSDVLKRPIDLI 480
            ++EGL+++   ++ +GDG +       AN       SG++V K   D+I
Sbjct: 865  LIEGLQKLGNVVAVTGDGTNDAPALKKANVGFSMGKSGTEVAKEASDII 913


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 271 SVTDHLREEGVDSVEGKPYGDILEGLKEMAREL 369
           S  D LREE ++  EG   G+I++    M  EL
Sbjct: 780 SAFDQLREEFMEVAEGTLLGEIIQSAPNMKEEL 812


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 217 IVMETNVVLYWGDGQLPPSVTDHLRE 294
           I+ + +V +Y G G L PS+ D+ RE
Sbjct: 155 ILPQPDVFIYQGSGSLRPSIIDYPRE 180


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 279 GSPEGGGRGQCRGQTLRGHFGGLKGNGARTVGER 380
           G   GGGRG  RG   RG  GG +G    + G R
Sbjct: 33  GGARGGGRGGARGG--RGGRGGARGGRGGSSGGR 64


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 524 SFLTNLASFTGDTSD-IKSIGRFRTSDPEAALWIASLASLDNQITCLPSPLS 372
           ++ T L   T DTS  +K      +  P ++ W AS +SL+N+I  L + LS
Sbjct: 415 AYNTMLCKLTEDTSSFLKRQTEMLSHSPASSHW-ASFSSLENEIANLKNLLS 465


>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 361 RELSESGDGRHVIWLSNDANEAIHRAASGSDVLKRPIDLISEVSPV--KLAKLVKNEIEL 534
           RELSE G     + ++   +E I RA    DVL      I E++ +  K  K  +N +EL
Sbjct: 29  RELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVEL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,058
Number of Sequences: 5004
Number of extensions: 65041
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)