Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_C04
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.9  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   4.3  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    27   4.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.7  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   10.0 
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   10.0 

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 489 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 623
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 695 PQASYPLW*LFWHLLLKTLYXKGSIGRA 612
           P   YP++   W LL  T Y K +IG+A
Sbjct: 3   PSIKYPIY--EWELLQDTYYQKSAIGKA 28


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 641 LYXKGSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNS 471
           L+  GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP +  
Sbjct: 125 LFMVGSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAK 184

Query: 470 PPGSVLE 450
           PP SV+E
Sbjct: 185 PPASVIE 191


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 774 LANLLRNDRKSRH-RRIKKQRRYERLAATSQLSP 676
           LAN +R DR+S H    +K++ Y ++A++  + P
Sbjct: 696 LANFIRYDRESVHIPEFQKRKSYSQVASSFLIEP 729


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 606  SPYAY*TSGSSQLLPFCSTRGF 541
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 498 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 349
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,310
Number of Sequences: 5004
Number of extensions: 69469
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)